BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0615200 Os11g0615200|J065098E17
(205 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0615200 SSXT family protein 300 4e-82
Os12g0496900 SSXT family protein 178 2e-45
Os03g0733600 SSXT family protein 92 3e-19
>Os11g0615200 SSXT family protein
Length = 205
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 154/184 (83%), Positives = 154/184 (83%)
Query: 22 ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADAQPPQNPGS 81
ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADAQPPQNPGS
Sbjct: 22 ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADAQPPQNPGS 81
Query: 82 RPQMMQPGATPGAGHYMSQVPMFPPRTPLTPXXXXXXXXXXXXXXXXXXXXFPGQMLMRP 141
RPQMMQPGATPGAGHYMSQVPMFPPRTPLTP FPGQMLMRP
Sbjct: 82 RPQMMQPGATPGAGHYMSQVPMFPPRTPLTPQQMQEQQQQQLQQQQAQALAFPGQMLMRP 141
Query: 142 GTVNGMQSIPVADPARAADLQTAAPGSVDGRGNKQDATSEPSGTESHKSXXXXXXXXXXI 201
GTVNGMQSIPVADPARAADLQTAAPGSVDGRGNKQDATSEPSGTESHKS I
Sbjct: 142 GTVNGMQSIPVADPARAADLQTAAPGSVDGRGNKQDATSEPSGTESHKSAGADNDAGGDI 201
Query: 202 AEKS 205
AEKS
Sbjct: 202 AEKS 205
>Os12g0496900 SSXT family protein
Length = 185
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/171 (62%), Positives = 114/171 (66%), Gaps = 18/171 (10%)
Query: 21 GITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADAQPPQNPG 80
GITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIAD Q PQ
Sbjct: 17 GITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADTQ-PQTTI 75
Query: 81 SRPQMMQPGATPG-AGHYMSQVPMFPPRTPLTPXXXXXXXXXXXXXXXXXXXXFPGQMLM 139
SRPQM+ GA+PG G YMSQVPMFPPRTPLTP F GQM+M
Sbjct: 76 SRPQMVPHGASPGLGGQYMSQVPMFPPRTPLTP---QQMQEQQLQQQQAQLLSFGGQMVM 132
Query: 140 RPGTVNGMQSIPVADPARAADLQTAAPGSVDGRGNKQDATSEPSGTESHKS 190
RPG VNG+ + + R AD Q A ATSEPS ESH+S
Sbjct: 133 RPGVVNGIPQLLQGEMHRGADHQNAG-----------GATSEPS--ESHRS 170
>Os03g0733600 SSXT family protein
Length = 227
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%), Gaps = 4/73 (5%)
Query: 22 ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAAIADAQPPQNPGS 81
+TT+ IQ+YLDENKQLILAIL+NQN GK+ ECA+ QA+LQ NL+YLAAIAD+QPPQ
Sbjct: 23 VTTDLIQQYLDENKQLILAILDNQNNGKVEECARNQAKLQHNLMYLAAIADSQPPQTAAM 82
Query: 82 RPQ----MMQPGA 90
MMQ GA
Sbjct: 83 SQYPSNLMMQSGA 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,822,456
Number of extensions: 222583
Number of successful extensions: 761
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 3
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)