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Os12g0496900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SSXT family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0209) R2 : 0.556
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.28 (0.0546) R2dC : 0.539 R2C : 0.524
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.223 (0.0439) R2dN8 : 0.0323 R2N8 : 0.0173
σ : 0.394
deviance : 70.82
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.7 0.341 11 -0.571 1.25 0.448 0.636 -6.46 0.148 17.5 28.83 1278 -- --
55.63 0.347 10.9 0.688 1.27 -0.288 0.732 -- 0.246 17.6 32.8 1497 -- --
53.68 0.341 11 -0.605 1.25 0.457 -- -6.59 0.144 17.5 28.8 1284 -- --
56.36 0.35 10.9 0.686 1.27 -0.291 -- -- 0.241 17.5 32.95 1193 -- --
101.77 0.47 11 -0.00549 -- 1.4 -- -2.74 -0.0051 -- 24.4 282 -- --
59.33 0.361 10.9 0.622 1.29 -- 0.735 -- 0.288 17.4 -- -- -- --
60.67 0.365 10.9 0.621 1.29 -- -- -- 0.292 17.4 -- -- -- --
104.71 0.477 10.9 0.382 -- 1.22 -- -- 0.146 -- 24.4 272 -- --
68.54 0.386 10.9 -- 1.27 -0.22 -- -- 0.177 17.5 32.8 1193 -- --
147.78 0.568 10.9 0.577 -- -- -- -- 0.26 -- -- -- -- --
70.82 0.394 10.9 -- 1.28 -- -- -- 0.223 17.4 -- -- -- --
108.44 0.485 10.9 -- -- 1.28 -- -- 0.0993 -- 24.36 272 -- --
156.56 0.584 10.9 -- -- -- -- -- 0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.85 wind 1.0 270 < th dose independent rect. 4 1
2 50.32 wind 3.0 10 < th dose dependent rect. 4 4
3 50.33 wind 3.0 90 < th dose dependent rect. 3 4
5 50.52 wind 1.0 270 < th dose dependent rect. 4 1
7 50.55 temperature 30.0 1440 > th dose dependent rect. 18 15
15 50.81 temperature 25.0 720 > th dose dependent rect. 20 3
20 50.91 temperature 30.0 1440 > th dose dependent rect. 18 1
38 51.07 temperature 25.0 720 > th dose dependent rect. 20 1
44 51.15 humidity 80.0 720 < th dose dependent rect. 20 1
46 51.17 wind 1.0 90 < th dose independent rect. 1 4
65 51.25 wind 3.0 10 < th dose dependent rect. 4 17
85 51.41 wind 7.0 270 < th dose independent rect. 5 21
90 51.45 atmosphere 1010.0 90 < th dose dependent rect. 4 1
93 51.48 humidity 90.0 90 > th dose independent rect. 4 1
95 51.48 temperature 20.0 10 > th dose dependent rect. 4 2
96 51.51 wind 1.0 14400 < th dose independent rect. 22 4
103 51.59 temperature 15.0 270 > th dose dependent rect. 3 2
112 51.65 wind 7.0 90 < th dose independent rect. 7 20
114 51.66 wind 3.0 90 < th dose independent rect. 3 6
115 51.66 atmosphere 1000.0 10 > th dose independent rect. 22 6
122 51.67 wind 1.0 14400 < th dose dependent rect. 13 15
127 51.70 wind 7.0 10 < th dose independent rect. 6 22
141 51.77 temperature 15.0 90 > th dose dependent rect. 3 4
143 51.79 wind 3.0 10 < th dose independent rect. 4 2
149 51.80 radiation 1.0 270 < th dose dependent rect. 2 17
155 51.82 humidity 60.0 90 > th dose dependent rect. 21 6
157 51.83 radiation 20.0 4320 < th dose independent rect. 15 18
163 51.85 humidity 80.0 90 > th dose dependent rect. 4 1
165 51.85 atmosphere 995.0 10 > th dose dependent rect. 22 6
167 51.87 humidity 50.0 1440 < th dose independent rect. 16 1
168 51.87 humidity 50.0 1440 < th dose dependent rect. 16 1
174 51.89 atmosphere 1015.0 10 < th dose dependent rect. 4 2
181 51.91 temperature 25.0 90 < th dose independent rect. 4 1
187 51.92 wind 3.0 10 < th dose independent rect. 4 4
188 51.92 atmosphere 1000.0 90 > th dose independent rect. 22 5
190 51.92 temperature 25.0 90 < th dose independent rect. 3 19
198 51.94 wind 3.0 4320 < th dose independent rect. 8 2
199 51.94 temperature 20.0 270 > th dose independent rect. 2 3
202 51.95 temperature 30.0 1440 > th dose independent rect. 18 1
218 51.96 temperature 30.0 1440 < th dose independent sin 12 NA
234 52.00 humidity 70.0 270 > th dose dependent rect. 2 3
241 52.02 wind 9.0 90 < th dose dependent rect. 21 6
258 52.04 atmosphere 1000.0 270 > th dose independent rect. 23 1
259 52.04 wind 7.0 10 < th dose independent rect. 8 20
275 52.06 temperature 15.0 270 > th dose dependent rect. 1 5
285 52.10 temperature 20.0 90 > th dose independent rect. 4 1
290 52.11 temperature 30.0 1440 > th dose independent sin 12 NA
292 52.11 wind 1.0 14400 < th dose independent rect. 17 9
294 52.11 atmosphere 1015.0 90 < th dose dependent rect. 3 4
299 52.12 atmosphere 995.0 270 > th dose dependent rect. 23 1
302 52.12 wind 9.0 90 < th dose dependent rect. 8 19
306 52.14 radiation 20.0 4320 < th dose independent rect. 8 1
307 52.14 temperature 30.0 1440 < th dose independent rect. 15 8
313 52.15 wind 5.0 90 < th dose independent rect. 21 6
314 52.15 temperature 30.0 1440 < th dose independent rect. 15 6
316 52.15 temperature 30.0 1440 < th dose independent rect. 15 11
318 52.15 temperature 30.0 1440 < th dose independent rect. 15 14
320 52.15 temperature 30.0 1440 < th dose independent rect. 15 17
324 52.16 humidity 80.0 10 > th dose independent rect. 4 2
327 52.16 humidity 70.0 10 > th dose dependent rect. 4 2
332 52.18 temperature 30.0 1440 < th dose independent rect. 15 4
354 52.22 temperature 30.0 1440 > th dose independent rect. 15 4
392 52.24 precipitation 0.1 270 < th dose independent rect. 3 2
397 52.24 precipitation 0.1 270 < th dose dependent rect. 3 2
400 52.25 wind 3.0 4320 > th dose independent rect. 8 2
404 52.25 radiation 10.0 4320 > th dose dependent rect. 16 16
407 52.26 wind 1.0 14400 > th dose independent rect. 17 9
408 52.26 wind 1.0 14400 < th dose independent rect. 14 12
414 52.27 temperature 20.0 10 > th dose independent rect. 4 2
424 52.28 radiation 1.0 270 < th dose independent rect. 1 18
439 52.31 radiation 10.0 43200 > th dose independent rect. 12 2
449 52.32 humidity 50.0 10 > th dose dependent rect. 22 6
452 52.33 humidity 80.0 720 < th dose independent rect. 20 1
473 52.36 humidity 70.0 43200 > th dose dependent rect. 20 1
478 52.37 radiation 20.0 4320 < th dose independent rect. 6 3
479 52.37 temperature 30.0 1440 < th dose independent rect. 18 5
480 52.37 radiation 20.0 4320 < th dose independent rect. 24 9
483 52.37 wind 1.0 14400 > th dose independent rect. 14 12
493 52.38 radiation 20.0 4320 < th dose independent rect. 2 7
495 52.38 humidity 70.0 270 > th dose dependent rect. 23 1
497 52.39 wind 1.0 14400 < th dose independent rect. 23 1
505 52.39 wind 9.0 270 < th dose dependent rect. 6 19
517 52.41 atmosphere 1015.0 270 < th dose dependent rect. 1 5
530 52.43 wind 1.0 14400 > th dose independent rect. 22 4
531 52.43 humidity 70.0 270 > th dose dependent rect. 1 5
545 52.45 temperature 30.0 1440 < th dose independent rect. 18 3
547 52.45 radiation 10.0 4320 > th dose independent rect. 16 16
552 52.46 radiation 20.0 4320 < th dose independent sin 12 NA
555 52.46 precipitation 0.1 90 < th dose independent rect. 7 20
562 52.46 wind 3.0 10 < th dose dependent rect. 4 12
563 52.46 precipitation 0.1 90 < th dose dependent rect. 7 20
569 52.48 wind 1.0 30 < th dose independent rect. 2 9
570 52.48 humidity 50.0 270 > th dose independent rect. 15 15
594 52.50 radiation 10.0 10 < th dose independent rect. 4 2
598 52.50 wind 9.0 10 < th dose dependent rect. 22 6
600 52.51 wind 1.0 270 > th dose independent rect. 3 1
601 52.51 wind 7.0 270 < th dose dependent rect. 23 1
625 52.53 humidity 60.0 90 > th dose dependent rect. 3 6
628 52.53 humidity 50.0 10 > th dose dependent rect. 4 16
632 52.54 humidity 80.0 270 > th dose independent rect. 1 5
635 52.54 temperature 30.0 1440 < th dose independent rect. 14 22
640 52.55 precipitation 0.1 10 < th dose independent rect. 4 2
644 52.55 precipitation 0.1 10 < th dose dependent rect. 4 2
651 52.56 wind 3.0 4320 < th dose dependent rect. 8 1
690 52.59 temperature 30.0 10 < th dose dependent rect. 22 6
696 52.60 temperature 10.0 90 > th dose independent rect. 4 1
699 52.60 humidity 50.0 90 > th dose independent rect. 4 1
702 52.60 atmosphere 995.0 90 > th dose independent rect. 4 1
703 52.60 atmosphere 1010.0 90 < th dose independent rect. 4 1
705 52.60 radiation 1.0 90 < th dose independent rect. 4 1
711 52.60 temperature 10.0 10 > th dose independent rect. 4 2
713 52.60 temperature 30.0 10 < th dose independent rect. 4 2
714 52.60 humidity 50.0 10 > th dose independent rect. 4 2
717 52.60 atmosphere 995.0 10 > th dose independent rect. 4 2
718 52.60 atmosphere 1010.0 10 < th dose independent rect. 4 2
739 52.60 temperature 10.0 10 > th dose independent rect. 6 22
741 52.60 temperature 10.0 90 > th dose independent rect. 5 23
742 52.60 radiation 10.0 90 < th dose dependent rect. 4 1
755 52.62 radiation 20.0 43200 > th dose independent rect. 10 2
760 52.62 precipitation 0.1 90 < th dose independent rect. 5 23
767 52.62 precipitation 0.1 90 < th dose dependent rect. 5 23
770 52.63 wind 9.0 10 < th dose independent rect. 22 6
771 52.63 temperature 10.0 90 > th dose independent rect. 21 6
772 52.63 temperature 10.0 10 > th dose independent rect. 22 6
773 52.63 temperature 30.0 90 < th dose independent rect. 21 6
774 52.63 temperature 30.0 10 < th dose independent rect. 22 6
775 52.63 humidity 50.0 90 > th dose independent rect. 21 6
778 52.63 humidity 50.0 10 > th dose independent rect. 22 6
783 52.63 radiation 1.0 90 < th dose independent rect. 21 6
788 52.63 radiation 1.0 10 < th dose independent rect. 22 6
800 52.63 temperature 10.0 90 > th dose independent rect. 3 18
801 52.63 temperature 10.0 10 > th dose independent rect. 4 18
804 52.63 atmosphere 1015.0 90 < th dose independent rect. 3 18
805 52.63 atmosphere 1015.0 10 < th dose independent rect. 4 18
807 52.63 wind 1.0 14400 < th dose dependent rect. 22 4
810 52.63 radiation 1.0 90 < th dose dependent rect. 21 6
815 52.63 radiation 1.0 10 < th dose dependent rect. 22 6
822 52.64 wind 1.0 14400 > th dose independent rect. 20 6
830 52.64 precipitation 0.1 270 < th dose independent rect. 5 21
837 52.64 precipitation 0.1 270 < th dose dependent rect. 5 21
840 52.65 humidity 70.0 43200 > th dose dependent rect. 19 3
844 52.66 precipitation 0.1 90 < th dose independent rect. 21 6
853 52.66 precipitation 0.1 90 < th dose dependent rect. 21 6
854 52.66 humidity 50.0 90 > th dose dependent rect. 3 8
869 52.67 radiation 20.0 43200 < th dose dependent rect. 10 1
895 52.68 wind 1.0 14400 < th dose dependent sin 16 NA
913 52.69 temperature 30.0 1440 > th dose dependent rect. 15 4
960 52.71 radiation 10.0 43200 > th dose independent rect. 17 21
967 52.72 wind 5.0 270 < th dose independent rect. 23 1
972 52.72 radiation 10.0 43200 > th dose independent rect. 7 7
983 52.72 humidity 50.0 90 > th dose dependent rect. 3 18