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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0733600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SSXT family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0341) R2 : 0.208
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.94 (0.46) R2dE : 0.201 R2E : 0.202
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.117 (0.0718) R2dN8 : 0.006 R2N8 : 0.00728
σ : 0.641
deviance : 189.18
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.116
memory length : 80
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.9
open length of G : 1.65

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.73 0.639 2.96 0.117 0.237 4.73 -0.373 -1.17 -0.104 10.3 1.115 85 15 0.883
184.89 0.633 2.96 0.115 0.237 4.95 -0.37 -- -0.105 10.4 1.101 84 14.9 1.38
185.24 0.634 2.96 0.103 0.239 4.71 -- -1.18 -0.105 10.8 1.113 87 15 1.38
185.42 0.634 2.96 0.101 0.239 4.94 -- -- -0.105 10.8 1.101 81 15 1.6
188.77 0.64 2.97 0.0988 -- 4.73 -- -1.16 -0.106 -- 1.107 90 14.9 1.45
232.04 0.714 2.97 0.0427 0.268 -- -0.327 -- -0.143 12.2 -- -- -- --
232.5 0.714 2.97 0.0301 0.269 -- -- -- -0.144 12.4 -- -- -- --
188.94 0.64 2.97 0.0962 -- 4.96 -- -- -0.107 -- 1.125 79 14.9 1.62
185.68 0.635 2.97 -- 0.238 4.92 -- -- -0.117 10.7 1.113 80 15 1.64
237.06 0.719 2.98 0.021 -- -- -- -- -0.148 -- -- -- -- --
232.52 0.713 2.97 -- 0.269 -- -- -- -0.147 12.4 -- -- -- --
189.18 0.641 2.97 -- -- 4.94 -- -- -0.117 -- 1.116 80 14.9 1.65
237.07 0.719 2.98 -- -- -- -- -- -0.151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.76 wind 1.0 90 < th dose independent rect. 15 1
2 185.99 wind 1.0 90 < th dose dependent rect. 15 1
22 191.13 wind 3.0 10 < th dose independent rect. 16 1
25 191.61 wind 3.0 10 < th dose dependent rect. 16 1
111 204.04 atmosphere 1005.0 10 < th dose dependent rect. 16 1
113 204.10 atmosphere 1005.0 90 < th dose dependent rect. 15 1
141 206.16 radiation 30.0 30 > th dose dependent rect. 15 1
158 206.25 radiation 40.0 90 > th dose independent rect. 15 1
367 207.82 humidity 60.0 30 < th dose independent rect. 15 1
413 209.93 humidity 60.0 30 < th dose dependent rect. 15 1
519 212.35 atmosphere 1005.0 90 < th dose independent rect. 14 1
531 212.92 temperature 25.0 10 > th dose independent rect. 15 1
613 215.31 humidity 90.0 90 > th dose independent rect. 14 1
616 215.31 humidity 90.0 90 > th dose dependent rect. 14 1
648 215.72 precipitation 0.1 90 > th dose independent rect. 14 3
708 216.45 precipitation 0.1 90 > th dose dependent rect. 14 3
733 217.03 atmosphere 1005.0 270 < th dose dependent rect. 11 5
756 217.56 atmosphere 1000.0 90 < th dose independent rect. 6 3
758 217.58 radiation 40.0 30 > th dose dependent sin 9 NA
779 217.95 atmosphere 1000.0 270 < th dose independent rect. 4 4
782 217.97 atmosphere 1005.0 10 < th dose independent rect. 15 1
800 218.02 atmosphere 1005.0 270 < th dose dependent rect. 12 1
828 218.34 atmosphere 1000.0 10 < th dose independent rect. 7 3
849 218.53 atmosphere 1005.0 90 < th dose dependent rect. 8 8
869 218.59 atmosphere 1005.0 10 < th dose dependent rect. 12 5
987 219.31 precipitation 0.1 90 > th dose independent rect. 4 13