Os11g0615200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SSXT family protein.
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Os11g0615200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SSXT family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.14 | 0.266 | 10.4 | 0.477 | 0.452 | 0.791 | 0.185 | -1.75 | 0.278 | 11.2 | 51.98 | 1004 | -- | -- |
| 32.84 | 0.267 | 10.4 | 0.57 | 0.451 | 0.337 | 0.273 | -- | 0.276 | 11.2 | 55 | 1060 | -- | -- |
| 32.27 | 0.265 | 10.4 | 0.482 | 0.451 | 0.8 | -- | -1.86 | 0.278 | 11.2 | 52 | 1001 | -- | -- |
| 33.14 | 0.268 | 10.4 | 0.578 | 0.448 | 0.332 | -- | -- | 0.277 | 11.2 | 55 | 1060 | -- | -- |
| 44.13 | 0.309 | 10.4 | 0.522 | -- | 0.672 | -- | -1.83 | 0.25 | -- | 50 | 985 | -- | -- |
| 36.04 | 0.281 | 10.4 | 0.633 | 0.401 | -- | 0.212 | -- | 0.223 | 10.9 | -- | -- | -- | -- |
| 36.23 | 0.282 | 10.4 | 0.642 | 0.4 | -- | -- | -- | 0.224 | 11 | -- | -- | -- | -- |
| 42.1 | 0.304 | 10.4 | 0.613 | -- | 0.196 | -- | -- | 0.218 | -- | 75 | 1584 | -- | -- |
| 41.72 | 0.301 | 10.4 | -- | 0.475 | 0.41 | -- | -- | 0.233 | 11.1 | 56 | 1066 | -- | -- |
| 46.18 | 0.318 | 10.4 | 0.633 | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
| 47.09 | 0.321 | 10.4 | -- | 0.394 | -- | -- | -- | 0.152 | 10.9 | -- | -- | -- | -- |
| 52 | 0.337 | 10.4 | -- | -- | 0.211 | -- | -- | 0.15 | -- | 75 | 1584 | -- | -- |
| 56.75 | 0.352 | 10.4 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.63 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 2 | 29.76 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 30.04 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 7 | 30.28 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 8 | 30.32 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 13 | 30.50 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 22 | 30.58 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 6 |
| 24 | 30.59 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 27 | 30.70 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 30 | 30.84 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 32 | 30.87 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 48 | 30.91 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 53 | 30.95 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 61 | 31.12 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 64 | 31.19 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 71 | 31.34 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 73 | 31.43 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 77 | 31.44 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 80 | 31.47 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 17 |
| 81 | 31.48 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 82 | 31.50 | radiation | 1.0 | 10 | > th | dose independent | rect. | 16 | 15 |
| 109 | 31.63 | radiation | 1.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 112 | 31.67 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 8 |
| 116 | 31.70 | radiation | 1.0 | 10 | > th | dose independent | sin | 12 | NA |
| 121 | 31.71 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 131 | 31.79 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 132 | 31.80 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 163 | 31.85 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 12 |
| 168 | 31.86 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 200 | 31.90 | radiation | 1.0 | 10 | < th | dose independent | sin | 12 | NA |
| 235 | 32.02 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 252 | 32.03 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 267 | 32.08 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 273 | 32.09 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 16 | 12 |
| 276 | 32.10 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 290 | 32.11 | humidity | 90.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 292 | 32.12 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 296 | 32.12 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 322 | 32.20 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 323 | 32.20 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 3 |
| 336 | 32.22 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 12 |
| 343 | 32.23 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 351 | 32.24 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 10 | 18 |
| 353 | 32.25 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 360 | 32.26 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 369 | 32.27 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 386 | 32.32 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 10 |
| 389 | 32.33 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 394 | 32.33 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 400 | 32.35 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 10 |
| 406 | 32.36 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 427 | 32.37 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 430 | 32.38 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 465 | 32.41 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 475 | 32.41 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 550 | 32.46 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 594 | 32.48 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 633 | 32.50 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 13 |
| 654 | 32.51 | wind | 1.0 | 30 | > th | dose independent | sin | 3 | NA |
| 691 | 32.53 | wind | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 705 | 32.54 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 732 | 32.57 | humidity | 50.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 778 | 32.58 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 812 | 32.60 | humidity | 50.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 840 | 32.61 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 16 | 15 |
| 847 | 32.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 854 | 32.62 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 14 |
| 862 | 32.62 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 875 | 32.63 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 884 | 32.64 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 15 |
| 890 | 32.64 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 906 | 32.65 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 911 | 32.65 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 951 | 32.67 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 12 | 18 |