BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0602600 Os11g0602600|AK072671
         (195 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0602600  Similar to 40S ribosomal protein S9                 374   e-104
Os03g0154700  Similar to 40S ribosomal protein S9                 374   e-104
AK064649                                                          249   6e-67
Os03g0379500  Similar to 40S ribosomal protein S9                 168   2e-42
Os07g0628300  Similar to 40S ribosomal protein S9                  78   3e-15

>Os11g0602600 Similar to 40S ribosomal protein S9
          Length = 195

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 120

Query: 121 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 180
           AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 180

Query: 181 KAS 183
           KAS
Sbjct: 181 KAS 183



>Os03g0154700 Similar to 40S ribosomal protein S9
          Length = 195

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARH 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGM 120

Query: 121 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 180
           AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQK 180

Query: 181 KAS 183
           KAS
Sbjct: 181 KAS 183



>AK064649 
          Length = 194

 Score =  249 bits (637), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 145/172 (84%)

Query: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 71
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 72  IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 131
           +FEG ALLRR+ R G+L +G+ KLDY+L L +E+FL RRLQT VFK G+AK IHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKPIHHARVLI 130

Query: 132 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKAS 183
           RQRHIRV +Q+VNIPSF+VR++S+KHIDFSL SP+GGG  GRVKRKN KK  
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRAGRVKRKNAKKGQ 182



>Os03g0379500 Similar to 40S ribosomal protein S9
          Length = 104

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 90/104 (86%)

Query: 50  ALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLAR 109
           ALS IRN AR LLTLDEKNPRRIFEGEALLR MNRYGLL +GQNKLDYVLALTVENFL  
Sbjct: 1   ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60

Query: 110 RLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVE 153
           RLQT+VFK G  KSIHH  VLIRQ HIRVGRQ+VNIP FMVR++
Sbjct: 61  RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104



>Os07g0628300 Similar to 40S ribosomal protein S9
          Length = 42

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/37 (97%), Positives = 36/37 (97%)

Query: 1  MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYG 37
          M HVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYG
Sbjct: 1  MAHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYG 37



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,242,211
Number of extensions: 231317
Number of successful extensions: 512
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 5
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)