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Os03g0379500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 40S ribosomal protein S9.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.71 (0.0391) R2 : 0.667
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.769 (0.101) R2dC : 0.0434 R2C : -0.16
β3 : 1.26 (0.14) R2dE : 0.0651 R2E : -0.287
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.51 (0.0854) R2dN8 : 0.892 R2N8 : 0.567
σ : 0.726
deviance : 243.11
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C
peak time of C : 17.4
E
wheather : temperature
threshold : 19.8
memory length : 2617
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.72 0.714 7.79 -0.566 0.658 1.07 2.57 -1.5 -2.65 18.9 20.16 3640 -- --
231.59 0.709 7.73 -0.281 0.684 1.35 2.35 -- -2.59 18.8 20 2795 -- --
239.49 0.721 7.75 -0.517 0.751 1.15 -- -1.24 -2.58 17.8 19.86 2752 -- --
240.97 0.723 7.72 -0.323 0.791 1.43 -- -- -2.56 17.4 19.9 2646 -- --
270.41 0.766 7.75 -0.523 -- 1.12 -- -1.25 -2.59 -- 19.9 2759 -- --
266.72 0.766 7.65 0.459 0.664 -- 2.62 -- -2.23 19 -- -- -- --
280.85 0.785 7.64 0.419 0.728 -- -- -- -2.22 17.7 -- -- -- --
271.78 0.768 7.71 -0.241 -- 1.35 -- -- -2.55 -- 20 2160 -- --
243.11 0.726 7.71 -- 0.769 1.26 -- -- -2.51 17.4 19.8 2617 -- --
308.38 0.821 7.63 0.396 -- -- -- -- -2.24 -- -- -- -- --
285.48 0.79 7.65 -- 0.722 -- -- -- -2.27 17.7 -- -- -- --
272.72 0.769 7.69 -- -- 1.22 -- -- -2.5 -- 20.2 2137 -- --
312.52 0.825 7.64 -- -- -- -- -- -2.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 217.19 temperature 20 720 > th dose dependent rect. 24 10
5 217.93 temperature 20 720 > th dose independent rect. 23 10
38 222.10 temperature 20 1440 > th dose independent rect. 5 2
40 222.29 temperature 20 720 > th dose dependent rect. 4 5
46 222.52 temperature 20 720 > th dose independent sin 8 NA
58 223.47 temperature 20 1440 < th dose independent rect. 1 6
59 223.48 temperature 20 1440 < th dose independent rect. 5 2
77 224.05 radiation 20 1440 < th dose independent rect. 11 2
78 224.10 temperature 20 270 > th dose dependent sin 5 NA
79 224.22 temperature 20 720 > th dose dependent sin 7 NA
91 224.59 temperature 20 720 > th dose independent rect. 1 2
123 225.17 temperature 20 1440 > th dose independent rect. 3 1
126 225.23 temperature 20 1440 < th dose independent rect. 1 3
142 225.36 temperature 20 1440 < th dose independent rect. 3 1
143 225.39 radiation 20 1440 < th dose dependent rect. 11 2
158 225.63 temperature 20 720 > th dose dependent rect. 6 1
198 226.18 humidity 50 43200 < th dose dependent rect. 8 1
204 226.26 radiation 40 43200 > th dose independent rect. 7 1
220 226.26 radiation 40 43200 > th dose dependent rect. 7 1
285 226.51 temperature 20 720 > th dose independent rect. 22 19
288 226.56 humidity 60 43200 < th dose dependent rect. 2 6
289 226.58 humidity 60 43200 < th dose dependent rect. 4 4
295 226.63 humidity 60 43200 < th dose dependent rect. 22 10
305 226.84 temperature 25 90 > th dose dependent sin 2 NA
309 226.89 temperature 20 4320 < th dose independent rect. 14 3
323 227.12 atmosphere 995 43200 > th dose independent rect. 21 15
324 227.13 atmosphere 995 43200 > th dose independent rect. 19 17
331 227.24 atmosphere 995 43200 < th dose independent rect. 21 15
337 227.28 temperature 20 4320 < th dose dependent rect. 16 3
341 227.34 temperature 20 720 > th dose dependent rect. 8 1
345 227.43 atmosphere 995 43200 < th dose independent rect. 22 13
351 227.48 temperature 20 4320 > th dose independent rect. 13 4
374 227.75 wind 1 14400 < th dose independent rect. 24 2
396 228.01 wind 1 14400 > th dose independent rect. 24 2
402 228.03 atmosphere 995 43200 < th dose dependent sin 10 NA
405 228.06 humidity 90 43200 > th dose independent rect. 16 1
410 228.11 atmosphere 995 43200 < th dose dependent rect. 22 11
420 228.26 radiation 20 4320 > th dose dependent rect. 16 16
436 228.56 atmosphere 995 43200 < th dose independent sin 8 NA
437 228.56 radiation 40 4320 < th dose independent rect. 7 1
438 228.57 atmosphere 995 43200 > th dose independent rect. 3 6
439 228.57 atmosphere 995 43200 > th dose independent rect. 1 9
440 228.58 atmosphere 995 43200 < th dose independent rect. 24 10
447 228.63 atmosphere 995 43200 < th dose independent rect. 2 7
463 228.74 temperature 20 4320 < th dose independent rect. 16 11
469 228.76 temperature 20 4320 > th dose independent rect. 16 11
472 228.79 radiation 10 1440 < th dose dependent rect. 9 5
484 228.89 atmosphere 995 43200 < th dose independent rect. 4 4
498 229.01 wind 1 14400 > th dose independent rect. 23 4
506 229.05 atmosphere 995 43200 > th dose independent rect. 5 3
572 229.43 wind 3 43200 < th dose dependent rect. 8 1
586 229.54 humidity 90 43200 < th dose independent rect. 16 2
600 229.59 temperature 25 270 > th dose dependent rect. 6 8
602 229.60 atmosphere 995 43200 > th dose independent sin 7 NA
609 229.62 atmosphere 995 43200 < th dose dependent rect. 3 5
614 229.64 wind 1 14400 < th dose dependent rect. 19 13
627 229.74 humidity 90 43200 > th dose dependent rect. 12 4
631 229.75 radiation 40 4320 < th dose independent rect. 2 6
640 229.81 temperature 20 1440 < th dose independent sin 10 NA
652 229.82 radiation 10 1440 < th dose dependent rect. 8 8
662 229.83 humidity 90 43200 > th dose dependent rect. 13 1
666 229.85 radiation 10 1440 < th dose independent rect. 12 5
667 229.85 humidity 70 43200 < th dose independent rect. 23 8
700 229.98 radiation 40 4320 < th dose independent rect. 24 8
714 230.06 temperature 20 4320 > th dose independent sin 14 NA
720 230.07 temperature 20 4320 < th dose independent sin 14 NA
774 230.31 wind 1 14400 < th dose dependent rect. 21 11
781 230.35 humidity 70 43200 > th dose independent rect. 23 8
805 230.45 wind 3 43200 < th dose independent rect. 8 1
808 230.46 wind 3 4320 > th dose independent rect. 8 1
809 230.46 radiation 10 1440 < th dose independent rect. 14 2
829 230.57 humidity 50 43200 < th dose independent rect. 5 3
847 230.64 temperature 15 43200 < th dose dependent rect. 1 1
891 230.85 temperature 25 30 > th dose dependent rect. 8 10
892 230.86 wind 3 43200 > th dose independent rect. 8 1
898 230.88 humidity 90 43200 > th dose dependent rect. 16 1
911 230.93 temperature 15 43200 < th dose dependent rect. 22 2
915 230.95 humidity 50 43200 < th dose independent rect. 3 6
940 230.99 temperature 15 43200 < th dose dependent rect. 22 4
964 231.11 wind 1 14400 > th dose independent rect. 19 12
980 231.14 temperature 10 43200 > th dose independent rect. 9 11
981 231.14 humidity 50 43200 < th dose dependent rect. 19 15
988 231.19 wind 1 14400 < th dose independent rect. 19 12
997 231.22 radiation 40 4320 < th dose independent rect. 16 16