BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0379500 Os03g0379500|AK064760
         (104 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15200.1  | chr5:4935124-4936334 REVERSE LENGTH=199            175   5e-45
AT5G39850.1  | chr5:15950053-15951171 FORWARD LENGTH=198          174   7e-45

>AT5G15200.1 | chr5:4935124-4936334 REVERSE LENGTH=199
          Length = 198

 Score =  175 bits (443), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 93/104 (89%)

Query: 1   ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60
           +LS IRNAAR+LLTLDEK+PRRIFEGEALLR MNRYGLL E QNKLDYVLALTVENFL+ 
Sbjct: 50  SLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLER 109

Query: 61  RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104
           RLQTIVFK+G  KSIHH  VLIRQ HIRVG+QLVNIP FMVRLD
Sbjct: 110 RLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLD 153



>AT5G39850.1 | chr5:15950053-15951171 FORWARD LENGTH=198
          Length = 197

 Score =  174 bits (442), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 92/104 (88%)

Query: 1   ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60
            LS IRNAARELLTLDEKNPRRIFEGEALLR MNRYGLL E QNKLDYVLALTVENFL+ 
Sbjct: 50  TLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLER 109

Query: 61  RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104
           RLQTIVFK+G  KSIHH  VLIRQ HIRVGRQLVNIP FMVR++
Sbjct: 110 RLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVE 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,141,258
Number of extensions: 76439
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)