BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0379500 Os03g0379500|AK064760
(104 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0379500 Similar to 40S ribosomal protein S9 211 7e-56
Os11g0602600 Similar to 40S ribosomal protein S9 168 7e-43
Os03g0154700 Similar to 40S ribosomal protein S9 168 7e-43
AK064649 137 2e-33
>Os03g0379500 Similar to 40S ribosomal protein S9
Length = 104
Score = 211 bits (538), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60
ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC
Sbjct: 1 ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60
Query: 61 RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104
RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD
Sbjct: 61 RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104
>Os11g0602600 Similar to 40S ribosomal protein S9
Length = 195
Score = 168 bits (426), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 90/104 (86%)
Query: 1 ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60
ALS IRN AR LLTLDEKNPRRIFEGEALLR MNRYGLL +GQNKLDYVLALTVENFL
Sbjct: 50 ALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLAR 109
Query: 61 RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104
RLQT+VFK G KSIHH VLIRQ HIRVGRQ+VNIP FMVR++
Sbjct: 110 RLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVE 153
>Os03g0154700 Similar to 40S ribosomal protein S9
Length = 195
Score = 168 bits (426), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 90/104 (86%)
Query: 1 ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60
ALS IRN AR LLTLDEKNPRRIFEGEALLR MNRYGLL +GQNKLDYVLALTVENFL
Sbjct: 50 ALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLAR 109
Query: 61 RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104
RLQT+VFK G KSIHH VLIRQ HIRVGRQ+VNIP FMVR++
Sbjct: 110 RLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVE 153
>AK064649
Length = 194
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 82/104 (78%)
Query: 1 ALSPIRNAARELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQC 60
L+ IR AARELLTLDEK+PRR+FEG ALLR + R G+L EG+ KLDY+L L +E+FL+
Sbjct: 49 TLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLER 108
Query: 61 RLQTIVFKNGTVKSIHHDHVLIRQHHIRVGRQLVNIPLFMVRLD 104
RLQT VFK G K IHH VLIRQ HIRV +Q+VNIP F+VRLD
Sbjct: 109 RLQTQVFKLGLAKPIHHARVLIRQRHIRVRKQVVNIPSFIVRLD 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.143 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,207,693
Number of extensions: 109641
Number of successful extensions: 207
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 4
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)