BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0600000 Os11g0600000|Os11g0600000
(342 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0600000 601 e-172
Os07g0224100 184 9e-47
Os01g0389800 157 1e-38
Os04g0188200 120 1e-27
Os10g0383200 Chromo domain containing protein 110 2e-24
Os08g0344700 109 4e-24
Os08g0250800 104 8e-23
Os02g0522000 Retrotransposon gag protein family protein 102 4e-22
Os09g0250466 95 8e-20
Os02g0713000 88 1e-17
Os12g0611600 80 2e-15
Os07g0195900 78 8e-15
Os08g0451600 Peptidase aspartic, catalytic domain containin... 72 6e-13
Os09g0347100 66 4e-11
>Os11g0600000
Length = 342
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/342 (88%), Positives = 303/342 (88%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL
Sbjct: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
Query: 61 EAQSSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESSEGYDE 120
EAQSSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESSEGYDE
Sbjct: 61 EAQSSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESSEGYDE 120
Query: 121 TFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKESFKN 180
TFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKESFKN
Sbjct: 121 TFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKESFKN 180
Query: 181 NFKVXXXXXXXXXXXXXNALFGTEGKRTXXXXXXXXXXXXXXDSGSSSSFMASHLVDRLH 240
NFKV NALFGTEGKRT DSGSSSSFMASHLVDRLH
Sbjct: 181 NFKVEESSSDEELLLSENALFGTEGKRTIWLQGLIQQVLILIDSGSSSSFMASHLVDRLH 240
Query: 241 LVPNSIPSALVMIIDGGKLFCDEMAEQVEWWCQGNTFSSNFKXXXXXXXXXXXXMDWLEA 300
LVPNSIPSALVMIIDGGKLFCDEMAEQVEWWCQGNTFSSNFK MDWLEA
Sbjct: 241 LVPNSIPSALVMIIDGGKLFCDEMAEQVEWWCQGNTFSSNFKILGLGGYDLILGMDWLEA 300
Query: 301 HSPMWIHWGRKTVRFTHSGKDITLQGVQDCLKQCSLISRKQL 342
HSPMWIHWGRKTVRFTHSGKDITLQGVQDCLKQCSLISRKQL
Sbjct: 301 HSPMWIHWGRKTVRFTHSGKDITLQGVQDCLKQCSLISRKQL 342
>Os07g0224100
Length = 284
Score = 184 bits (467), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 97/183 (53%), Positives = 129/183 (70%), Gaps = 19/183 (10%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M +AEGE+ +L +V L++NL+ ILGSL+G+E WIP+VDAG++ L ++V+ I +RV L
Sbjct: 1 MVVAEGEIESLGSRVTKLTSNLNNILGSLQGLEKWIPNVDAGIKSLHQAVDEISSRVTAL 60
Query: 61 EAQSS----TATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESSE 116
E + + TATPPP GH V++ YQG+ + QERTLVK ++
Sbjct: 61 ETKPAESPATATPPPFGHGVNDGYQGDTYEIPAIQERTLVKV---------------YNK 105
Query: 117 GYDETFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKE 176
G+DETFFVTKF+GGLKTEIKAAIKLH+P TVDAALSLAKTQ ELL E++ K+Y + + KE
Sbjct: 106 GFDETFFVTKFVGGLKTEIKAAIKLHKPRTVDAALSLAKTQVELLGEIHKKSYQRHSFKE 165
Query: 177 SFK 179
FK
Sbjct: 166 VFK 168
>Os01g0389800
Length = 281
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 154/342 (45%), Gaps = 117/342 (34%)
Query: 5 EGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKLEAQS 64
EGE L +KV +L+++ + ILG+L+G+E+WIP+VDAGM L ++VEGI R+ LE+Q
Sbjct: 14 EGETEALGEKVAELTSSHNNILGTLRGLESWIPNVDAGMWDLNKTVEGISTRITALESQP 73
Query: 65 ----STATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESSEGYDE 120
+ ATPPP G +QG AT A +AQE TLVK
Sbjct: 74 KASPTAATPPPEGQGKVENHQGLATDASAAQEHTLVK----------------------- 110
Query: 121 TFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKESFKN 180
GLK EIK AIKLH+P VDAALSLAK QEEL+ E K ++ +T + SFK
Sbjct: 111 ---------GLKGEIKFAIKLHKPRIVDAALSLAKIQEELIAEAGKKNFYVST-RGSFKE 160
Query: 181 NFKVXXXXXXXXXXXXXNALFGTEGKRTXXXXXXXXXXXXXXDSGSSSSFMASHLVDRLH 240
G +GK GSSS+F++ ++ RL+
Sbjct: 161 -------------ANTAPGKIGYQGK------------------GSSSNFLSESVIKRLN 189
Query: 241 LVPNSIPSALVMIIDGGKLFCDEMAEQVEWWCQGNTFSSNFKXXXXXXXXXXXXMDWLEA 300
IP + S F
Sbjct: 190 -----IP------------------------VEDTAVSQEF------------------- 201
Query: 301 HSPMWIHWGRKTVRFTHSGKDITLQGVQDCLKQCSLISRKQL 342
SPMW+ W RK +RFTH K ITL GV+D L C L+S KQL
Sbjct: 202 -SPMWVDWKRKKLRFTHHDKRITLFGVKDQLNHCKLMSAKQL 242
>Os04g0188200
Length = 211
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 12/183 (6%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M +AEGE+ +L + +L++NL+ ILGSL+G+E WIP+VD ++ L ++V+ I +RV L
Sbjct: 1 MVVAEGEIESLGSRFTELTSNLNNILGSLQGLEKWIPNVDTAIKSLHQAVDEIASRVTTL 60
Query: 61 EAQ----SSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESSE 116
E + +TATPPP GH V++ YQG+A+ + ERTLVK AV+ + G+ +
Sbjct: 61 ETKPAESPATATPPPFGHGVNDGYQGDASGIPAIHERTLVKESWAELIMAVHSKFGK--D 118
Query: 117 GYDETFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKE 176
Y E +L L+ + D ALSLAKTQEELL E++ K Y + + KE
Sbjct: 119 KYQE------YLEELENLSQVTSVESYYSKCDVALSLAKTQEELLGEIHKKTYQRHSFKE 172
Query: 177 SFK 179
FK
Sbjct: 173 IFK 175
>Os10g0383200 Chromo domain containing protein
Length = 400
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M + E+V+LNQ+V +L++NL+ +LGSL +E WIPSVD G+Q L ++VEGI ARV L
Sbjct: 11 MVAVKAELVDLNQRVGELASNLNDLLGSLTKLETWIPSVDTGIQALNKAVEGIAARVTVL 70
Query: 61 E----AQSSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESS 115
E A S TP P GH +QG+ + A +AQ+R LVK K + P S + F++GESS
Sbjct: 71 ENSPAAASGMTTPTPIGHGETENHQGDESKALAAQDRFLVKGKSRFPNSPITFDIGESS 129
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 5/57 (8%)
Query: 127 FLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKESFKNNFK 183
F+GGLKTEIKAAIKLHRP TVD ALSLAKTQEEL++E+ K T K +K N+K
Sbjct: 235 FVGGLKTEIKAAIKLHRPRTVDTALSLAKTQEELVLELK-----KGTQKLGYKQNYK 286
>Os08g0344700
Length = 366
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 92/183 (50%), Gaps = 37/183 (20%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M +AEG+ ++ KV DL+ +L+ IL SL+G+E WIP VD G++ L +S+EGI+ V L
Sbjct: 1 MGVAEGDAESMATKVADLTASLNNILVSLQGMEKWIPCVDNGIRELNKSMEGIEVHVTAL 60
Query: 61 EAQSSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGESSEGYDE 120
EA + P G RV+ ++QG A + +AQERTL + K Q P S + FE+GESSE
Sbjct: 61 EASTPMNMKTPVGPRVEEQHQGAAVESLAAQERTLGRGKRQFPHSPIPFELGESSE---- 116
Query: 121 TFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTIKESFKN 180
EELL EV K Y KT KE +K
Sbjct: 117 ---------------------------------RGNGEELLNEVGKKGYSKTVFKEPYKP 143
Query: 181 NFK 183
K
Sbjct: 144 QGK 146
>Os08g0250800
Length = 163
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 4/104 (3%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M AE E+ L ++V +L+TN++ +LG+++G+E WIPSVDAG++ LR +VEGI ARV L
Sbjct: 1 MGAAEEEIETLGERVTELTTNINNLLGTMQGLEKWIPSVDAGIKDLRSTVEGIAARVTDL 60
Query: 61 EAQ----SSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKI 100
EA+ S+ ATP P+GHR + +QG + A S Q+RTLVK I
Sbjct: 61 EARPQATSAMATPMPDGHRGEEYHQGFDSGANSVQDRTLVKGVI 104
>Os02g0522000 Retrotransposon gag protein family protein
Length = 380
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%), Gaps = 6/119 (5%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M+ AE E+ +L+QKVV+L++NL+ ILGSL +E WIP+VD G+QGL VE I ARV KL
Sbjct: 22 MAAAETELGDLSQKVVNLTSNLNNILGSLTKLETWIPAVDVGIQGLNNVVEEISARVTKL 81
Query: 61 EAQ-----SSTATPPPNGHRVDNKYQGEATAAESAQERTLVKSKIQIPQSAVNFEVGES 114
E+ + A P V+N +QG A+ A A ERTLVK K ++P S VNF++GE+
Sbjct: 82 ESMLATATFAAAQTPVGPDNVEN-HQGNASKALVAHERTLVKGKSRLPISPVNFDLGEA 139
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 59/71 (83%), Gaps = 2/71 (2%)
Query: 115 SEGYDETFFVTKFLGGLKTEIKAAIKLHRPGTVDAALSLAKTQEELLMEVNLKAYHKTTI 174
++ +DET+FVTKF+GGLKTEIKAAIKLH+P TVDAALSLAKTQE+L +E+ K K+T
Sbjct: 266 NQAFDETYFVTKFVGGLKTEIKAAIKLHKPRTVDAALSLAKTQEDLALEIK-KGGQKSTY 324
Query: 175 KESFKNN-FKV 184
KE FK+ F+V
Sbjct: 325 KEGFKSTAFRV 335
>Os09g0250466
Length = 202
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 6/104 (5%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M +AEGE+ L +V +L+++++ ILGSL+G+E WIP+VD GM+ LR++V+ + ARV +L
Sbjct: 1 MEVAEGEIGFLTTRVTELTSSINSILGSLQGMEKWIPTVDLGMKDLRQAVDQVNARVAQL 60
Query: 61 EAQSSTATPP-----PNGHRVDNKYQGEATAAESAQERTLVKSK 99
E ++ ATP P G D YQG+AT A AQERTLVK +
Sbjct: 61 ETRAQ-ATPAMAKQTPVGPGDDENYQGDATGASFAQERTLVKEE 103
>Os02g0713000
Length = 108
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 4/104 (3%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M+ EGEV +L +V +L+T+L+ ILGSL+G+E WIP+VD G++ LR++VE + +RV L
Sbjct: 1 MAAVEGEVESLTTRVAELTTSLNSILGSLQGMEKWIPAVDEGIKDLRQAVEQVASRVTTL 60
Query: 61 EAQS-STATP---PPNGHRVDNKYQGEATAAESAQERTLVKSKI 100
EA++ +T P PP GH +QG AT Q R LVK I
Sbjct: 61 EAKAPATTMPVTIPPVGHGAALNHQGAATGTPVDQGRALVKGGI 104
>Os12g0611600
Length = 72
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 53/68 (77%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M+ AE E+ +LNQ+VVDL++NL+ ILGSL +E WI +VDAG+QGL + VE I ARV KL
Sbjct: 1 MAAAETELGDLNQRVVDLTSNLNNILGSLTKLETWISTVDAGIQGLNKVVEEILARVTKL 60
Query: 61 EAQSSTAT 68
E+ +TAT
Sbjct: 61 ESSPATAT 68
>Os07g0195900
Length = 527
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 50/105 (47%)
Query: 223 DSGSSSSFMASHLVDRLHLVPNSIPSALVMIIDGGKLFCDEMAEQVEWWCQGNTFSSNFK 282
DSGSS SF+ + L RL L S A V I DG L C WW QG TF S+ K
Sbjct: 312 DSGSSHSFINADLCHRLQLPLVSCDPATVKIADGTLLTCSAQVPAFTWWIQGYTFVSSMK 371
Query: 283 XXXXXXXXXXXXMDWLEAHSPMWIHWGRKTVRFTHSGKDITLQGV 327
MDWL +SPM +W K + F + + + LQG+
Sbjct: 372 VLDLGGYDAVLGMDWLSQYSPMQCNWAEKCLSFAYQAQTVKLQGI 416
>Os08g0451600 Peptidase aspartic, catalytic domain containing protein
Length = 707
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%)
Query: 223 DSGSSSSFMASHLVDRLHLVPNSIPSALVMIIDGGKLFCDEMAEQVEWWCQGNTFSSNFK 282
DSGSS SF+ + L L I +LV + +G + C M Q WW QG TF+ + +
Sbjct: 169 DSGSSHSFLDYNFAQLLGLQLQPIAPSLVKVANGDCIHCQFMVPQFTWWFQGRTFTYDMR 228
Query: 283 XXXXXXXXXXXXMDWLEAHSPMWIHWGRKTVRFTHSGKDITLQGVQDCLKQCSL 336
MDWL M +W KT++F + G + LQGV D Q L
Sbjct: 229 VVPLGGHDAILGMDWLAQWGDMSCNWANKTLKFMYQGTWVELQGVPDSPPQTEL 282
>Os09g0347100
Length = 247
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 1 MSIAEGEVVNLNQKVVDLSTNLDRILGSLKGVEAWIPSVDAGMQGLRRSVEGIKARVIKL 60
M AE E L +KVV+L+T+++ ILGSL+G+E WIP VD+G++ L ++V+ I RV +L
Sbjct: 1 MGAAEEEAEVLGEKVVELTTSINNILGSLQGLEKWIPCVDSGIRELNKAVDEIAVRVTQL 60
Query: 61 EAQSSTATP 69
EA + T TP
Sbjct: 61 EAVTPT-TP 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,677,289
Number of extensions: 334545
Number of successful extensions: 1027
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 17
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)