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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0522000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Retrotransposon gag protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0217) R2 : 0.0412
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.202 (0.0457) R2dN8 : 0.0532 R2N8 : 0.0412
σ : 0.408
deviance : 76.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.39 0.4 3.02 -0.145 0.11 -0.217 -0.56 2.02 0.209 2.53 61 295 -- --
75.25 0.404 3.01 -0.0831 0.0713 0.217 -0.3 -- 0.2 2.62 50 369 -- --
72.75 0.397 3.02 -0.119 0.0757 -0.0953 -- 1.58 0.211 1.33 61.35 711 -- --
75.39 0.404 3.01 -0.0692 0.0835 0.247 -- -- 0.181 1.89 49 313 -- --
73.17 0.398 3.02 -0.116 -- -0.106 -- 1.6 0.211 -- 61.02 711 -- --
75.59 0.408 3.01 -0.0937 0.104 -- -0.209 -- 0.189 1.96 -- -- -- --
75.76 0.408 3.01 -0.0873 0.104 -- -- -- 0.19 1.97 -- -- -- --
75.88 0.406 3.01 -0.0585 -- 0.295 -- -- 0.185 -- 49 323 -- --
75.44 0.405 3.01 -- 0.0906 0.3 -- -- 0.19 0.594 49.87 373 -- --
76.41 0.408 3.01 -0.083 -- -- -- -- 0.193 -- -- -- -- --
75.96 0.408 3.01 -- 0.102 -- -- -- 0.2 1.95 -- -- -- --
75.97 0.406 3.01 -- -- 0.317 -- -- 0.19 -- 49.95 326 -- --
76.59 0.408 3 -- -- -- -- -- 0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.46 radiation 20.0 720 > th dose independent rect. 15 17
2 67.63 atmosphere 1005.0 90 > th dose independent rect. 1 2
3 67.81 atmosphere 1005.0 10 > th dose dependent rect. 1 2
5 67.97 atmosphere 1005.0 90 > th dose dependent rect. 1 2
6 68.00 radiation 20.0 720 > th dose dependent rect. 15 17
7 68.01 atmosphere 1005.0 10 > th dose independent rect. 2 1
9 68.28 temperature 25.0 10 < th dose independent rect. 2 1
12 68.32 wind 3.0 10 < th dose independent rect. 2 1
13 68.33 wind 3.0 10 < th dose dependent rect. 24 3
18 68.44 wind 1.0 30 < th dose dependent rect. 2 1
19 68.44 temperature 30.0 30 < th dose dependent rect. 2 1
21 68.45 wind 9.0 10 < th dose independent rect. 3 23
23 68.52 wind 9.0 10 < th dose independent rect. 2 1
24 68.52 temperature 10.0 10 > th dose independent rect. 2 1
27 68.52 humidity 50.0 10 > th dose independent rect. 2 1
30 68.52 atmosphere 995.0 10 > th dose independent rect. 2 1
31 68.52 atmosphere 1010.0 10 < th dose independent rect. 2 1
33 68.52 radiation 1.0 10 < th dose independent rect. 2 1
38 68.52 precipitation 0.1 10 < th dose independent rect. 2 1
39 68.52 temperature 10.0 10 > th dose independent rect. 3 23
40 68.52 wind 7.0 10 < th dose dependent rect. 2 1
42 68.52 radiation 1.0 10 < th dose dependent rect. 2 1
47 68.52 precipitation 0.1 10 < th dose dependent rect. 2 1
86 68.60 temperature 10.0 10 > th dose dependent rect. 2 1
91 68.64 atmosphere 995.0 10 > th dose independent rect. 3 23
92 68.64 atmosphere 1015.0 30 < th dose dependent rect. 2 1
96 68.68 wind 1.0 30 > th dose independent rect. 2 1
99 68.68 humidity 50.0 30 > th dose dependent rect. 2 1
121 68.95 radiation 1.0 14400 < th dose dependent rect. 3 1
128 69.00 wind 9.0 1440 < th dose independent rect. 3 1
129 69.00 temperature 10.0 1440 > th dose independent rect. 3 1
132 69.00 temperature 30.0 1440 < th dose independent rect. 3 1
136 69.00 humidity 50.0 1440 > th dose independent rect. 3 1
145 69.00 atmosphere 995.0 1440 > th dose independent rect. 3 1
146 69.00 radiation 1.0 1440 < th dose independent rect. 3 1
166 69.00 temperature 10.0 1440 > th dose independent rect. 4 23
169 69.00 radiation 1.0 1440 < th dose dependent rect. 3 1
187 69.02 radiation 20.0 720 > th dose independent rect. 15 2
208 69.11 radiation 1.0 720 > th dose dependent rect. 15 2
225 69.45 precipitation 0.1 10 < th dose independent rect. 3 23
226 69.45 precipitation 0.1 10 < th dose dependent rect. 3 23
227 69.48 radiation 1.0 720 > th dose dependent rect. 15 15
237 69.62 humidity 90.0 90 < th dose independent rect. 1 2
238 69.63 humidity 60.0 90 > th dose independent rect. 3 8
262 69.74 humidity 50.0 10 > th dose independent rect. 3 23
280 69.92 wind 1.0 10 < th dose independent rect. 9 18
328 70.19 humidity 60.0 270 > th dose independent rect. 2 20
336 70.21 temperature 10.0 720 > th dose dependent rect. 3 2
359 70.32 radiation 40.0 90 < th dose independent rect. 3 8
367 70.33 humidity 60.0 90 > th dose independent rect. 3 12
372 70.36 temperature 10.0 90 > th dose dependent rect. 3 21
377 70.40 atmosphere 1010.0 90 < th dose independent rect. 23 4
383 70.42 humidity 90.0 270 < th dose independent rect. 23 2
453 70.61 humidity 60.0 90 > th dose independent rect. 3 10
461 70.64 precipitation 0.1 720 < th dose independent rect. 17 22
462 70.64 precipitation 0.1 720 < th dose dependent rect. 17 22
470 70.69 temperature 15.0 90 > th dose independent rect. 23 4
480 70.75 radiation 30.0 720 < th dose dependent rect. 15 15
484 70.77 precipitation 0.1 270 < th dose independent rect. 1 22
485 70.77 precipitation 0.1 270 < th dose dependent rect. 1 22
490 70.79 radiation 40.0 1440 < th dose independent rect. 15 19
492 70.80 radiation 40.0 30 < th dose independent rect. 3 21
494 70.80 radiation 40.0 1440 > th dose dependent rect. 8 1
520 70.85 humidity 90.0 720 < th dose dependent rect. 15 2
523 70.86 radiation 20.0 720 > th dose independent sin 13 NA
526 70.88 atmosphere 1010.0 270 < th dose independent rect. 23 2
533 70.90 radiation 30.0 720 < th dose dependent rect. 15 8
534 70.90 wind 3.0 10 < th dose dependent rect. 17 10
539 70.92 wind 9.0 10 < th dose independent rect. 3 21
591 70.97 radiation 20.0 720 < th dose independent rect. 15 16
592 70.97 precipitation 0.1 720 < th dose independent rect. 3 18
596 70.97 precipitation 0.1 720 < th dose dependent rect. 3 18
598 70.98 radiation 20.0 720 > th dose dependent sin 12 NA
606 71.02 wind 1.0 270 > th dose independent rect. 23 2
612 71.03 radiation 10.0 4320 < th dose dependent rect. 1 3
615 71.04 temperature 10.0 1440 > th dose independent rect. 1 3
618 71.04 temperature 30.0 1440 < th dose independent rect. 1 3
622 71.04 humidity 50.0 1440 > th dose independent rect. 1 3
631 71.04 atmosphere 995.0 1440 > th dose independent rect. 1 3
632 71.04 radiation 1.0 1440 < th dose independent rect. 1 3
654 71.04 temperature 10.0 1440 > th dose independent rect. 4 21
671 71.06 radiation 30.0 720 < th dose independent sin 12 NA
684 71.06 humidity 60.0 270 > th dose independent rect. 11 11
742 71.13 precipitation 0.1 10 < th dose independent rect. 24 3
744 71.13 precipitation 0.1 10 < th dose dependent rect. 24 3
761 71.17 radiation 40.0 1440 < th dose independent rect. 8 2
770 71.18 wind 1.0 30 < th dose dependent rect. 9 18
776 71.19 radiation 40.0 1440 < th dose independent rect. 4 6
798 71.21 radiation 40.0 1440 < th dose independent rect. 20 14
808 71.21 humidity 50.0 90 > th dose dependent rect. 3 8
811 71.22 radiation 40.0 1440 > th dose independent rect. 8 1
865 71.22 radiation 40.0 1440 < th dose independent rect. 22 12
906 71.23 radiation 40.0 90 < th dose dependent rect. 3 8
927 71.24 temperature 10.0 270 > th dose independent rect. 1 22
985 71.29 wind 3.0 30 < th dose dependent rect. 11 16
990 71.30 wind 7.0 90 < th dose independent rect. 3 8
991 71.30 temperature 15.0 90 > th dose independent rect. 3 8