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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0600000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0455) R2 : 0.102
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.63 (0.528) R2dE : 0.101 R2E : 0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0141 (0.096) R2dN8 : -3.32e-05 R2N8 : 0.000279
σ : 0.824
deviance : 311.28
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.04
memory length : 10
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.2
open length of G : 15.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.04 0.852 3.06 -0.116 0.157 1.45 -0.139 -13.3 -0.0112 12.2 4 1 19 16
342.54 0.862 3.07 -0.0562 0.195 1.76 -0.119 -- 0.0268 11.7 4.8 11 19.2 15.3
310.51 0.827 3.03 -0.24 0.107 -2.86 -- -34.9 -0.014 13.3 7.04 10 19.2 15.9
310.57 0.826 3.08 -0.013 0.107 4.61 -- -- -0.014 13.3 7.04 10 19.2 15.9
311.22 0.826 3.04 -0.227 -- -2.29 -- -32.3 -0.016 -- 7.312 10 19.5 15.5
373.27 0.906 3.09 -0.135 0.143 -- -0.0628 -- -0.0659 12.8 -- -- -- --
373.28 0.905 3.09 -0.137 0.143 -- -- -- -0.0662 12.9 -- -- -- --
311.27 0.825 3.08 -0.0166 -- 4.63 -- -- -0.016 -- 7.04 10 19.2 15.9
310.58 0.825 3.08 -- 0.107 4.61 -- -- -0.0125 13.3 7.04 10 19.2 15.9
374.56 0.904 3.1 -0.142 -- -- -- -- -0.0689 -- -- -- -- --
373.78 0.904 3.09 -- 0.145 -- -- -- -0.0509 12.9 -- -- -- --
311.28 0.824 3.08 -- -- 4.63 -- -- -0.0141 -- 7.04 10 19.2 15.9
375.1 0.904 3.09 -- -- -- -- -- -0.0531 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 329.04 wind 7 10 > th dose independent rect. 19 16
2 329.24 wind 7 10 > th dose dependent rect. 9 2
7 329.28 wind 7 10 > th dose independent rect. 9 2
85 337.60 wind 5 10 > th dose dependent rect. 19 16
87 338.30 wind 7 10 > th dose independent rect. 18 21
128 342.30 wind 7 30 > th dose dependent rect. 19 1
136 342.55 radiation 10 90 < th dose dependent rect. 8 1
159 343.84 wind 7 30 > th dose independent rect. 19 1
168 344.55 wind 9 10 > th dose independent rect. 13 1
180 344.55 wind 9 10 > th dose dependent rect. 13 1
213 345.61 radiation 40 10 < th dose independent sin 13 NA
250 346.96 wind 7 10 > th dose independent sin 8 NA
254 347.13 wind 5 10 > th dose dependent rect. 19 19
263 347.47 radiation 10 90 < th dose independent rect. 8 1
270 347.80 wind 7 10 > th dose independent rect. 13 22
281 348.24 radiation 1 4320 > th dose dependent rect. 15 2
282 348.26 radiation 40 4320 < th dose dependent rect. 15 2
312 349.23 radiation 40 4320 < th dose dependent rect. 15 5
314 349.27 radiation 20 4320 < th dose independent rect. 15 1
316 349.30 radiation 40 4320 < th dose dependent rect. 15 12
320 349.32 radiation 40 4320 < th dose dependent rect. 15 10
321 349.32 radiation 40 4320 < th dose dependent rect. 15 14
351 349.65 radiation 30 4320 > th dose independent rect. 15 2
468 350.96 wind 7 10 > th dose independent rect. 9 6
529 351.67 atmosphere 1000 90 < th dose dependent rect. 15 7
549 351.77 wind 7 10 < th dose independent rect. 21 23
577 351.87 atmosphere 1000 90 < th dose dependent rect. 15 2
583 351.92 atmosphere 1000 90 < th dose independent rect. 14 3
593 352.01 atmosphere 1000 90 < th dose independent rect. 14 7
658 352.48 wind 7 10 < th dose independent sin 8 NA
703 352.74 radiation 20 4320 > th dose independent sin 14 NA
792 353.15 radiation 30 4320 < th dose independent rect. 15 5
796 353.20 radiation 30 4320 < th dose independent rect. 15 14
813 353.22 radiation 30 4320 < th dose independent rect. 15 12
816 353.24 radiation 30 4320 < th dose independent rect. 15 10
845 353.36 radiation 10 4320 < th dose dependent sin 15 NA
861 353.45 radiation 30 4320 < th dose dependent sin 15 NA
874 353.50 radiation 30 10 > th dose independent rect. 13 1
889 353.56 wind 7 10 > th dose dependent sin 8 NA
901 353.70 atmosphere 1000 10 < th dose dependent rect. 15 1
956 353.89 atmosphere 1000 10 < th dose independent rect. 15 3
967 353.92 atmosphere 1000 10 < th dose independent rect. 15 5
976 353.94 atmosphere 1000 10 < th dose independent rect. 15 1