BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0592100 Os11g0592100|AK063234
(152 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0592100 Similar to Barwin 266 3e-72
Os11g0592000 Similar to Barwin 244 2e-65
Os11g0591800 Barwin-related endoglucanase domain containing... 204 2e-53
Os11g0592200 Similar to Chitin-binding allergen Bra r 2 (Fr... 193 4e-50
Os11g0591700 Barwin-related endoglucanase domain containing... 130 4e-31
>Os11g0592100 Similar to Barwin
Length = 152
Score = 266 bits (681), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 27 QEASNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQ 86
QEASNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQ
Sbjct: 27 QEASNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQ 86
Query: 87 DACGKCLSVTNTATGDQITARIVDQCANGGLDLDWDTVFSKIDSDGQGYQNGHLIVDYQF 146
DACGKCLSVTNTATGDQITARIVDQCANGGLDLDWDTVFSKIDSDGQGYQNGHLIVDYQF
Sbjct: 87 DACGKCLSVTNTATGDQITARIVDQCANGGLDLDWDTVFSKIDSDGQGYQNGHLIVDYQF 146
Query: 147 VDCGDN 152
VDCGDN
Sbjct: 147 VDCGDN 152
>Os11g0592000 Similar to Barwin
Length = 150
Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 120/126 (95%)
Query: 27 QEASNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQ 86
QEASNVRATYHYYRPA+NNWDLGAPAVSAYCATWDA+KPL WRQKYGWTAFCGPVGP GQ
Sbjct: 25 QEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQ 84
Query: 87 DACGKCLSVTNTATGDQITARIVDQCANGGLDLDWDTVFSKIDSDGQGYQNGHLIVDYQF 146
ACGKCL VTNTATG QITARIVDQCANGGLDLDWDTVF+KID+DGQGYQ GHLIV+Y+F
Sbjct: 85 AACGKCLLVTNTATGAQITARIVDQCANGGLDLDWDTVFTKIDTDGQGYQKGHLIVNYKF 144
Query: 147 VDCGDN 152
VDCGDN
Sbjct: 145 VDCGDN 150
>Os11g0591800 Barwin-related endoglucanase domain containing protein
Length = 158
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/126 (74%), Positives = 105/126 (83%), Gaps = 2/126 (1%)
Query: 27 QEASNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQ 86
Q+A VRATYH+YRPA N WDL A A+C+TWDA KP +WR KY WTAFCGPVGPTG+
Sbjct: 27 QQAFGVRATYHFYRPAANGWDL--TATGAFCSTWDAGKPFDWRSKYEWTAFCGPVGPTGR 84
Query: 87 DACGKCLSVTNTATGDQITARIVDQCANGGLDLDWDTVFSKIDSDGQGYQNGHLIVDYQF 146
D+CGKCL VTN TG Q TARIVD+CANGGLDLDWDTVFSKID+DGQG+Q GHL VDY F
Sbjct: 85 DSCGKCLRVTNRVTGAQTTARIVDKCANGGLDLDWDTVFSKIDTDGQGFQRGHLTVDYSF 144
Query: 147 VDCGDN 152
V+CGDN
Sbjct: 145 VNCGDN 150
>Os11g0592200 Similar to Chitin-binding allergen Bra r 2 (Fragments)
Length = 146
Score = 193 bits (491), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 101/120 (84%), Gaps = 2/120 (1%)
Query: 30 SNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQDAC 89
SNVRATYHYY P +NNWDL VSAYCATWDA+KPL WRQKYGWTAFCGP GP G+D+C
Sbjct: 29 SNVRATYHYYNPQQNNWDLNK--VSAYCATWDANKPLSWRQKYGWTAFCGPAGPRGRDSC 86
Query: 90 GKCLSVTNTATGDQITARIVDQCANGGLDLDWDTVFSKIDSDGQGYQNGHLIVDYQFVDC 149
GKC+ V N TG I ARIVDQC+NGGLDLD++T+F KID+DG+GYQ GHL VDY+FV+C
Sbjct: 87 GKCIQVKNRGTGATIIARIVDQCSNGGLDLDYETIFKKIDTDGRGYQMGHLQVDYKFVNC 146
>Os11g0591700 Barwin-related endoglucanase domain containing protein
Length = 167
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 87/146 (59%), Gaps = 29/146 (19%)
Query: 29 ASNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQDA 88
AS V ATY+ P NWDL AVSAYC TWDAD PL WR+ YGWTAFCGP G G+ +
Sbjct: 28 ASGVVATYN---PDTINWDL--RAVSAYCLTWDADMPLAWRRCYGWTAFCGPAGAHGEPS 82
Query: 89 CG-----------------KCLS------VTNTATGDQITARIVDQCANGGLDLDWDTVF 125
C C+ VTNTAT AR+VDQC+ GGLDLD VF
Sbjct: 83 CATRRACGEDCVGVGVEQFACMRDAARVGVTNTATAASAVARVVDQCSTGGLDLDV-AVF 141
Query: 126 SKIDSDGQGYQNGHLIVDYQFVDCGD 151
+ID+DG G NGHL+VDY+FVDC D
Sbjct: 142 RQIDTDGGGMANGHLVVDYEFVDCQD 167
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,263,117
Number of extensions: 222034
Number of successful extensions: 463
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 5
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)