Os11g0592000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Barwin.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0592000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Barwin.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 778.22 | 1.31 | 6.78 | -1.44 | 0.682 | 0.589 | -1.08 | 8.91 | -0.407 | 1.25 | 1014 | 12373 | -- | -- |
| 811.75 | 1.33 | 6.9 | -3.04 | 0.736 | 1.96 | -0.862 | -- | -0.479 | 0.678 | 999.3 | 12070 | -- | -- |
| 783.03 | 1.3 | 6.77 | -1.4 | 0.691 | 0.585 | -- | 8.94 | -0.399 | 1.2 | 1014 | 12367 | -- | -- |
| 816.47 | 1.33 | 6.9 | -3.03 | 0.75 | 1.94 | -- | -- | -0.492 | 1.22 | 999.3 | 12050 | -- | -- |
| 811.77 | 1.33 | 6.76 | -1.32 | -- | 0.537 | -- | 9.16 | -0.383 | -- | 1014 | 12365 | -- | -- |
| 907.22 | 1.41 | 6.95 | -2.67 | 0.714 | -- | -1.15 | -- | -0.684 | 1.24 | -- | -- | -- | -- |
| 912.63 | 1.41 | 6.95 | -2.63 | 0.715 | -- | -- | -- | -0.678 | 1.18 | -- | -- | -- | -- |
| 851.17 | 1.36 | 6.89 | -3 | -- | 1.91 | -- | -- | -0.479 | -- | 999.4 | 12039 | -- | -- |
| 1041.65 | 1.5 | 6.84 | -- | 0.691 | 1.67 | -- | -- | -0.218 | 1.01 | 1000 | 7721 | -- | -- |
| 944.26 | 1.44 | 6.94 | -2.61 | -- | -- | -- | -- | -0.663 | -- | -- | -- | -- | -- |
| 1095.29 | 1.55 | 6.88 | -- | 0.671 | -- | -- | -- | -0.385 | 1.03 | -- | -- | -- | -- |
| 1071.29 | 1.52 | 6.83 | -- | -- | 1.63 | -- | -- | -0.212 | -- | 1000 | 7751 | -- | -- |
| 1123.28 | 1.56 | 6.87 | -- | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 757.79 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 758.04 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 29 | 758.93 | temperature | 30 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 31 | 758.99 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 32 | 759.08 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 34 | 759.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 37 | 759.40 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 39 | 759.50 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 43 | 762.20 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 46 | 763.56 | radiation | 10 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 49 | 764.95 | radiation | 10 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 68 | 769.48 | radiation | 10 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 72 | 769.89 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 73 | 770.00 | radiation | 10 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 74 | 770.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 109 | 771.25 | radiation | 10 | 43200 | > th | dose independent | sin | 23 | NA |
| 110 | 771.28 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 111 | 771.29 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 129 | 771.51 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 130 | 771.53 | radiation | 10 | 43200 | > th | dose independent | no | NA | NA |
| 132 | 771.53 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 299 | 773.66 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 303 | 773.95 | radiation | 10 | 43200 | > th | dose independent | sin | 13 | NA |
| 320 | 774.12 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 321 | 774.15 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 330 | 774.49 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 8 | 3 |
| 354 | 774.86 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 373 | 775.05 | radiation | 20 | 43200 | < th | dose dependent | rect. | 9 | 11 |
| 403 | 775.10 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 483 | 775.62 | radiation | 10 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 490 | 775.72 | humidity | 70 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 501 | 775.84 | radiation | 20 | 43200 | < th | dose dependent | sin | 21 | NA |
| 586 | 776.77 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 718 | 777.43 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 761 | 777.58 | wind | 7 | 14400 | > th | dose dependent | rect. | 14 | 7 |
| 765 | 777.58 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 22 |
| 839 | 778.08 | radiation | 10 | 43200 | < th | dose independent | sin | 21 | NA |
| 931 | 778.53 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 5 | NA |
| 957 | 778.68 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 5 | NA |
| 986 | 778.73 | radiation | 20 | 43200 | < th | dose dependent | rect. | 1 | 19 |