BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0592000 Os11g0592000|AK121059
(150 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0592000 Similar to Barwin 265 6e-72
Os11g0592100 Similar to Barwin 243 4e-65
Os11g0591800 Barwin-related endoglucanase domain containing... 199 5e-52
Os11g0592200 Similar to Chitin-binding allergen Bra r 2 (Fr... 199 6e-52
Os11g0591700 Barwin-related endoglucanase domain containing... 129 7e-31
>Os11g0592000 Similar to Barwin
Length = 150
Score = 265 bits (678), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 25 QEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQ 84
QEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQ
Sbjct: 25 QEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQ 84
Query: 85 AACGKCLLVTNTATGAQITARIVDQCANGGLDLDWDTVFTKIDTDGQGYQKGHLIVNYKF 144
AACGKCLLVTNTATGAQITARIVDQCANGGLDLDWDTVFTKIDTDGQGYQKGHLIVNYKF
Sbjct: 85 AACGKCLLVTNTATGAQITARIVDQCANGGLDLDWDTVFTKIDTDGQGYQKGHLIVNYKF 144
Query: 145 VDCGDN 150
VDCGDN
Sbjct: 145 VDCGDN 150
>Os11g0592100 Similar to Barwin
Length = 152
Score = 243 bits (619), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 120/126 (95%)
Query: 25 QEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQ 84
QEASNVRATYHYYRPA+NNWDLGAPAVSAYCATWDA+KPL WRQKYGWTAFCGPVGP GQ
Sbjct: 27 QEASNVRATYHYYRPAENNWDLGAPAVSAYCATWDADKPLEWRQKYGWTAFCGPVGPTGQ 86
Query: 85 AACGKCLLVTNTATGAQITARIVDQCANGGLDLDWDTVFTKIDTDGQGYQKGHLIVNYKF 144
ACGKCL VTNTATG QITARIVDQCANGGLDLDWDTVF+KID+DGQGYQ GHLIV+Y+F
Sbjct: 87 DACGKCLSVTNTATGDQITARIVDQCANGGLDLDWDTVFSKIDSDGQGYQNGHLIVDYQF 146
Query: 145 VDCGDN 150
VDCGDN
Sbjct: 147 VDCGDN 152
>Os11g0591800 Barwin-related endoglucanase domain containing protein
Length = 158
Score = 199 bits (507), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 104/126 (82%), Gaps = 2/126 (1%)
Query: 25 QEASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQ 84
Q+A VRATYH+YRPA N WDL A A+C+TWDA KP WR KY WTAFCGPVGP G+
Sbjct: 27 QQAFGVRATYHFYRPAANGWDL--TATGAFCSTWDAGKPFDWRSKYEWTAFCGPVGPTGR 84
Query: 85 AACGKCLLVTNTATGAQITARIVDQCANGGLDLDWDTVFTKIDTDGQGYQKGHLIVNYKF 144
+CGKCL VTN TGAQ TARIVD+CANGGLDLDWDTVF+KIDTDGQG+Q+GHL V+Y F
Sbjct: 85 DSCGKCLRVTNRVTGAQTTARIVDKCANGGLDLDWDTVFSKIDTDGQGFQRGHLTVDYSF 144
Query: 145 VDCGDN 150
V+CGDN
Sbjct: 145 VNCGDN 150
>Os11g0592200 Similar to Chitin-binding allergen Bra r 2 (Fragments)
Length = 146
Score = 199 bits (506), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 93/120 (77%), Positives = 103/120 (85%), Gaps = 2/120 (1%)
Query: 28 SNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQAAC 87
SNVRATYHYY P QNNWDL VSAYCATWDANKPLSWRQKYGWTAFCGP GPRG+ +C
Sbjct: 29 SNVRATYHYYNPQQNNWDLNK--VSAYCATWDANKPLSWRQKYGWTAFCGPAGPRGRDSC 86
Query: 88 GKCLLVTNTATGAQITARIVDQCANGGLDLDWDTVFTKIDTDGQGYQKGHLIVNYKFVDC 147
GKC+ V N TGA I ARIVDQC+NGGLDLD++T+F KIDTDG+GYQ GHL V+YKFV+C
Sbjct: 87 GKCIQVKNRGTGATIIARIVDQCSNGGLDLDYETIFKKIDTDGRGYQMGHLQVDYKFVNC 146
>Os11g0591700 Barwin-related endoglucanase domain containing protein
Length = 167
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 88/146 (60%), Gaps = 29/146 (19%)
Query: 27 ASNVRATYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSWRQKYGWTAFCGPVGPRGQAA 86
AS V ATY+ P NWDL AVSAYC TWDA+ PL+WR+ YGWTAFCGP G G+ +
Sbjct: 28 ASGVVATYN---PDTINWDL--RAVSAYCLTWDADMPLAWRRCYGWTAFCGPAGAHGEPS 82
Query: 87 CG-----------------KCLL------VTNTATGAQITARIVDQCANGGLDLDWDTVF 123
C C+ VTNTAT A AR+VDQC+ GGLDLD VF
Sbjct: 83 CATRRACGEDCVGVGVEQFACMRDAARVGVTNTATAASAVARVVDQCSTGGLDLDV-AVF 141
Query: 124 TKIDTDGQGYQKGHLIVNYKFVDCGD 149
+IDTDG G GHL+V+Y+FVDC D
Sbjct: 142 RQIDTDGGGMANGHLVVDYEFVDCQD 167
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,030,121
Number of extensions: 202423
Number of successful extensions: 461
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 5
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)