BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0539000 Os11g0539000|AK071015
(495 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0539000 Conserved hypothetical protein 905 0.0
Os11g0538400 Cyclin-like F-box domain containing protein 345 7e-95
Os11g0538700 330 1e-90
Os11g0642000 259 3e-69
Os11g0641900 253 3e-67
Os11g0642500 194 2e-49
Os11g0642100 Cyclin-like F-box domain containing protein 129 4e-30
Os11g0642300 121 1e-27
Os08g0328600 Cyclin-like F-box domain containing protein 119 5e-27
Os08g0330700 105 6e-23
Os04g0197800 95 1e-19
Os04g0231400 94 2e-19
Os08g0332500 84 3e-16
Os08g0330900 Cyclin-like F-box domain containing protein 72 1e-12
>Os11g0539000 Conserved hypothetical protein
Length = 495
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/495 (91%), Positives = 455/495 (91%)
Query: 1 MDVIDRFVHTERPLGADAAPDTDVWLRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEE 60
MDVIDRFVHTERPLGADAAPDTDVWLRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEE
Sbjct: 1 MDVIDRFVHTERPLGADAAPDTDVWLRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEE 60
Query: 61 LRISASAPAVXXXXXXGEVGRLVGVFHLDLRYVPSETLRVLDLSRCSGLRMPPAVETPRL 120
LRISASAPAV GEVGRLVGVFHLDLRYVPSETLRVLDLSRCSGLRMPPAVETPRL
Sbjct: 61 LRISASAPAVDDDDDDGEVGRLVGVFHLDLRYVPSETLRVLDLSRCSGLRMPPAVETPRL 120
Query: 121 TTLRLQACAVNVNDLQRVIDAAPALATVHLDSVSFDGMEHGCYRLRLPAATTALVLARCR 180
TTLRLQACAVNVNDLQRVIDAAPALATVHLDSVSFDGMEHGCYRLRLPAATTALVLARCR
Sbjct: 121 TTLRLQACAVNVNDLQRVIDAAPALATVHLDSVSFDGMEHGCYRLRLPAATTALVLARCR 180
Query: 181 TDAEPYRYRRSGRPLGTSSVEIDAPGLRSFRYAGYARRFSLASPPDMARADLHFFHDMYA 240
TDAEPYRYRRSGRPLGTSSVEIDAPGLRSFRYAGYARRFSLASPPDMARADLHFFHDMYA
Sbjct: 181 TDAEPYRYRRSGRPLGTSSVEIDAPGLRSFRYAGYARRFSLASPPDMARADLHFFHDMYA 240
Query: 241 SASTSRDLFWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEGHHE 300
SASTSRDLFWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEGHHE
Sbjct: 241 SASTSRDLFWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEGHHE 300
Query: 301 SASETAAAVAIGNLLRCCXXXXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQADLAES 360
SASETAAAVAIGNLLRCC ERDSAMNGRYGRDLLRARQQADLAES
Sbjct: 301 SASETAAAVAIGNLLRCCPAARHLALHLATAPPRERDSAMNGRYGRDLLRARQQADLAES 360
Query: 361 LDRFAXXXXXXXXXXXXXXXXXXVNSMDEHLSIVGLSGRSFACLKNSLRRFVIQFRMDRP 420
LDRFA VNSMDEHLSIVGLSGRSFACLKNSLRRFVIQFRMDRP
Sbjct: 361 LDRFARRRRRKPNPPPPPPPPTPVNSMDEHLSIVGLSGRSFACLKNSLRRFVIQFRMDRP 420
Query: 421 NCIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKRANHESSQGI 480
NCIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKRANHESSQGI
Sbjct: 421 NCIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKRANHESSQGI 480
Query: 481 DASTPRFRLLPLERR 495
DASTPRFRLLPLERR
Sbjct: 481 DASTPRFRLLPLERR 495
>Os11g0538400 Cyclin-like F-box domain containing protein
Length = 653
Score = 345 bits (884), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 228/486 (46%), Positives = 277/486 (56%), Gaps = 52/486 (10%)
Query: 32 VEREADRWVKRGDVVRDVVSHPAARRVEELRI----SASAPAVXXXXXXGEVGRLVGVFH 87
+ R+A+ W +R DVV VVSHPAARRVEELR+ SA P+ E G FH
Sbjct: 198 LHRDAEDWGRRHDVVAGVVSHPAARRVEELRVAAVRSADGPSSDREVTEMEEGE----FH 253
Query: 88 LDL-----RYVPSETLRVLDLSRCSGLRMPPAVETPRLTTLRLQACAVNVNDLQRVIDAA 142
L L +ETLRVLDL+ C G+ +P PRLTTLRL+ C V V DLQ V+D+A
Sbjct: 254 LSLGGSGGTQPSTETLRVLDLTGCGGVSLPAGAALPRLTTLRLRLCVVQVEDLQGVVDSA 313
Query: 143 PALATVHLDSVSFDGMEHG--CYRLRLPAATTALVLARCRTDAEPYRYRRSGRPLGTSSV 200
PALATVHL+SV G + C RLR PAAT ALVLA+CR + ++
Sbjct: 314 PALATVHLESVFLAGTKEDGCCARLRFPAAT-ALVLAKCRGHGSHHNGDDDASDC-EGAM 371
Query: 201 EIDAPGLRSFRYAGYARRFSLASPP-DMARADLHFFHD-----MYASASTSRDLFWRFVR 254
EIDAP LRSF+Y G RRFSL SP DM RADLHF HD + + R FWRF+
Sbjct: 372 EIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTAVLRARFWRFLH 431
Query: 255 SFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEGHHESASETAAAVAIGNL 314
+FRG++SLKLKV+ LK +AV G + LL VE L++ H+ ASET+ VAI NL
Sbjct: 432 NFRGVKSLKLKVTYLKAIAVTGNG-KGILLPPLHGVERLDVAALHDPASETST-VAIANL 489
Query: 315 LRCCXXXXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQADLAESLDRFAXXXXXXXXX 374
LRCC DS NG Y RD+LR R QADL ES+ R A
Sbjct: 490 LRCCPNLRDLVLRLSTVPP---DSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWPKPP 546
Query: 375 XXXXXXXXXVNSMDEHLS-----IVGLSGRSFACLKNSLRRFVIQFRMDRPNCIGVKLIK 429
++ M++ L I GLSGRSFACL++SL R IQFR D + +GV LIK
Sbjct: 547 PPPPPTK--ISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFRNDERSWLGVSLIK 604
Query: 430 FFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKRANHESSQGIDASTPRFRL 489
FFAENAI LEEMR+DGGN+RM DHIN VE WI +++ FR+
Sbjct: 605 FFAENAICLEEMRVDGGNERMRDHINRRVERWI-----------------VESGMRCFRV 647
Query: 490 LPLERR 495
LPLERR
Sbjct: 648 LPLERR 653
>Os11g0538700
Length = 584
Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 243/506 (48%), Positives = 292/506 (57%), Gaps = 51/506 (10%)
Query: 24 VWLRLSDD--VEREADRWVKRGDVVRDVVSHPAARRVEELRISASAPAVXXXXXXGEV-G 80
+ ++L+ D + R+ + W ++ DVV VVSHPAARRVEELR++A+ GEV
Sbjct: 96 ICMQLTADAFLHRDPEDWERKHDVVAGVVSHPAARRVEELRVAAAVVEAYWPSFDGEVTS 155
Query: 81 RLVGVFHLDLRYVPSETLRVLDLSRCSGLRMPPAVET----PRLTTLRLQACAVNVNDLQ 136
G F L L PSETLRVLDL+ C GL A PRLTTLRL+ C + ++DLQ
Sbjct: 156 SSEGEFRLCLDAQPSETLRVLDLAGCGGLSAAAAAAGVVALPRLTTLRLRLCNLQISDLQ 215
Query: 137 RVIDAAPALATVHLDSVSFDGM-EHGCYRLRLPAATTALVLARCRTDAEPYRYRRSGRPL 195
+IDAAP LATVHL+SV G E GC RLR PAATTAL + C D Y G
Sbjct: 216 GIIDAAPELATVHLESVFLAGTAEEGCVRLRFPAATTALAMINCGADC----YACGG--- 268
Query: 196 GTSSVEIDAPGLRSFRYAGYARRFSLASP-----PD---MARADLHF---FHDMYASAS- 243
+ EIDAP LRSF+Y G+ARRFSL SP PD +ARA+LHF FH A A+
Sbjct: 269 CYGATEIDAPRLRSFKYTGFARRFSLVSPAAAPPPDDTVVARAELHFLDHFHHKDADAAD 328
Query: 244 TSRDLFWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVA-FPNVEHLELEGHHESA 302
T R FW F+ +FRG +SLKLKVS LKH+AVAGRA L+ VE L+L H A
Sbjct: 329 TVRANFWLFLHNFRGAKSLKLKVSHLKHIAVAGRAAARRALLLPLHGVERLDLTARHADA 388
Query: 303 SETAA-------AVAIGNLLRCCXXXXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQA 355
+ + VAI NLLRCC S NG Y DLLR R++A
Sbjct: 389 AASGGRTTTTSTTVAIANLLRCCPNLRDLAIRLTRMV--PHGSTKNGVYAHDLLRERRRA 446
Query: 356 DLAESLDRFAXXXXXXXXXXXXXXXXXXVNSMDEHLSIVGLSGRSFACLKNSLRRFVIQF 415
DL ES RFA D I GLSGR F CL++SLRR IQF
Sbjct: 447 DLDESARRFARRRRRGSSTKKDLD--------DVSGDIHGLSGRIFHCLRSSLRRVGIQF 498
Query: 416 RMDRPN-CIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISD---SSSAKKR 471
+D N CIGV+LIKFFAENAI LEEM IDGGNQRMHDHINHMV+ WI+ SS+ +
Sbjct: 499 HLDEHNDCIGVRLIKFFAENAICLEEMCIDGGNQRMHDHINHMVQRWIAGRRCSSAKSEN 558
Query: 472 ANHESSQG--IDASTPRFRLLPLERR 495
SSQ +++S PRFR+ PL+RR
Sbjct: 559 GTGSSSQPDVLESSMPRFRVSPLQRR 584
>Os11g0642000
Length = 652
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 191/507 (37%), Positives = 259/507 (51%), Gaps = 65/507 (12%)
Query: 44 DVVRDVVSHPAARRVEEL--RISASAPAVXXX----XXXGEVGRLVGVFHLDLRYVPSET 97
DV+ VVSHPAAR VEEL R+++ + + E +GV+ L L ++P E
Sbjct: 155 DVLHTVVSHPAARLVEELCLRVASESDSYGVHRRRRDKEEEPSTDLGVYGLSLAFLPFEK 214
Query: 98 LRVLDLSRCSGLRMPPAVET-------PRLTTLRLQACAVNVNDLQRVIDAAPALATVHL 150
LRVLD++ C+ L +PP PRL TLRL+ CA V LQR+IDAAP LAT HL
Sbjct: 215 LRVLDIAGCNNLSLPPPPAAAAAAAAFPRLQTLRLRRCAAKVTHLQRLIDAAPGLATAHL 274
Query: 151 DSVSF---DGMEHGCYR-----------LRLPAATTALVLARC-RTDAEPY----RYRRS 191
+SV F D ++ Y LR PAAT+ L L C TD + Y RY
Sbjct: 275 ESVVFNTDDNNDNQSYNHRDTGACSSISLRCPAATS-LALEWCGSTDYKFYYAHSRYSDD 333
Query: 192 GRPLGTSSVEIDAPGLRSFRYAGYARRFSLASP-PDMAR----ADLHFFHDMYASASTSR 246
G S+ IDAP LRSFRY G R F L SP P+ LHF D Y T+R
Sbjct: 334 DDSCG-GSIAIDAPKLRSFRYKGLPRPFHLKSPAPETTTTTTAVSLHFNSDYYLKEDTAR 392
Query: 247 DLFWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEG---HHESAS 303
WRF+ +F ++LKLKV +L H+AVA +A+R++LL PN+ +ELE + +
Sbjct: 393 VHSWRFIGNFTNAKTLKLKVDNLDHLAVADKASRSKLLCVLPNLVSVELEAAQLMNTKMN 452
Query: 304 ETAAAVAIGNLLRCCXXXXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQADLAESLDR 363
+AVAI NLLRCC + RY + R R Q D +S+D
Sbjct: 453 TKKSAVAIANLLRCCPVLSEFTMKLNSA------TTCTDRYWPNH-RGRFQPDFYDSVDH 505
Query: 364 FAXXXXXXXXXXXXXXXXXXVNS--MDEHLSIVGLSGRSFACLKNSLRRFVIQFRMDRPN 421
F +DE I LS RSF CL+ SL++ ++F+ +
Sbjct: 506 FMRRKSNTTTAISSIDSRKGDGDRHVDEVPDIPALSRRSFTCLQRSLKKVSLKFKWSGDD 565
Query: 422 CIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSS--AKKRANH----- 474
C GV+L+KFFA+NA+ LEEMRID G++++ DH+N VE W+ S+ + KR N
Sbjct: 566 CFGVQLVKFFAQNAMVLEEMRIDSGDRKLCDHMNLNVERWVGADSTKISLKRKNFANSTW 625
Query: 475 -------ESSQGIDASTPRFRLLPLER 494
+S+ ++ ST F +LPLER
Sbjct: 626 EFSRTCPDSTPELETSTTSFIVLPLER 652
>Os11g0641900
Length = 600
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 192/499 (38%), Positives = 252/499 (50%), Gaps = 75/499 (15%)
Query: 49 VVSHPAARRVEELRISASAPAVXXXXXXG----EVGRL----VGVFHLDLRYVPSETLRV 100
VVSHPAAR VEELR+ + P E R + + L +PS TLRV
Sbjct: 125 VVSHPAARHVEELRVGVAGPMYRTDGAEQRPWQEARRWRSDDIYTYTLSFASLPSATLRV 184
Query: 101 LDLSRC----SGLRMPPA-VETPRLTTLRLQACAVNVNDLQRVIDAAPALATVHLDSVSF 155
LD++ C S L +P A V PRL TLRL+ CAV + LQR+IDAAPALATVHL+SV F
Sbjct: 185 LDITECNFSDSKLALPDAGVAFPRLDTLRLRLCAVRLAHLQRLIDAAPALATVHLESVYF 244
Query: 156 DGM----EHGCY----------RLRLPAATTALVLARCRTDAEPYRYRRSGRPLGTSSVE 201
+ +G Y LR PAAT L + C + + + G +
Sbjct: 245 EFNIYLDYYGVYGGLVAVESRLLLRCPAATE-LAMEFCGSSSYINSHLDGG-------IG 296
Query: 202 IDAPGLRSFRYAGYARRFSLASP-PDMARADLHFFHDMYASASTSRDLFWRFVRSFRGIR 260
IDAP LRSFRY G+ RRF L SP P+M ++HF + A D WRF+ +F ++
Sbjct: 297 IDAPKLRSFRYTGHPRRFYLESPAPEMTAVNIHFIDGDHRFA----DRLWRFLGNFTNVK 352
Query: 261 SLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEG----HHESASETAAAVAIGNLLR 316
LKL V +L H+AVAG+A RAELL F N+E LELE A AVAI NLL
Sbjct: 353 ILKLTVQELGHLAVAGKARRAELLCKFGNLERLELEAVRKPTKTKAPAPPPAVAIANLLH 412
Query: 317 CCXXXXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQADLAESLDRFAXXXXXXXXXXX 376
CC S N Y A+ + D +S+ F
Sbjct: 413 CCPALVDLSLKLKMLNYAW--SKNNSMYLSS-FHAKFKPDFDKSVGLFMRHKSKMTAVSS 469
Query: 377 XXXXXXXVNSMDEH-----LSIVGLSGRSFACLKNSLRRFVIQFRMDR-PNCIGVKLIKF 430
+DEH +I GLSG+SFACL SLRR +QF++ NC GV+LI+F
Sbjct: 470 SL--------IDEHHDDKFSNISGLSGKSFACLNRSLRRVNLQFQLGSASNCFGVRLIRF 521
Query: 431 FAENAIHLEEMRIDGGNQRMHDHINHMVEGWIS-DSSSAK-------------KRANHES 476
FA+NA+ LEEM ID GN+++ +H+N VE W+ DSS + R + +S
Sbjct: 522 FAQNAMVLEEMCIDSGNRKLCEHMNLNVERWVGVDSSKIRLKDKNLTGSSWEFSRIHPDS 581
Query: 477 SQGIDASTPRFRLLPLERR 495
+ + + F++LPLERR
Sbjct: 582 APEFERNATSFKVLPLERR 600
>Os11g0642500
Length = 493
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 158/424 (37%), Positives = 205/424 (48%), Gaps = 66/424 (15%)
Query: 44 DVVRDVVSHPAARRVEELRISASAPAVXXXXXXGEVGRLVGVFHLDLRYVPSETLRVLDL 103
DV+ VV+HPAARRVEELR++A + V ++ L +PS TLRVLDL
Sbjct: 101 DVLDAVVAHPAARRVEELRVAAVHRGQPDEHDDAVMDDDVFLYILRFSSLPSNTLRVLDL 160
Query: 104 SRCSGLRMPP-------AVETPRLTTLRLQACAVNVNDLQRVIDAAPALATVHLDSVSFD 156
+RC PP AV PRLTTLRL+ C +V L ++DAAP LATVHL+ V
Sbjct: 161 TRCHNFSPPPPPRTASAAVAFPRLTTLRLRHCTYSVKHLHGIVDAAPELATVHLEFVLLS 220
Query: 157 GMEHGCY-------RLRLPAATTALVLARCRTDAEPYRYRRSGRPLGTSSVEIDAPGLRS 209
H + LR P+AT L L CR + G P S+EI A LRS
Sbjct: 221 SDRHRRFGPVTWNTGLRFPSATV-LALIHCRGE--------EGAP--GRSMEITALRLRS 269
Query: 210 FRYAGYARRFSLASPPD-----MARADLHFFHDMYASASTSRDLFWRFVRSFRGIRSLKL 264
F Y G A F L SPP + ADLHF H M S F+ +F + L+L
Sbjct: 270 FTYKGEAVLFDLTSPPSPDTTTVVAADLHFTHGMGRCVDYS-----HFIHNFTNAKVLRL 324
Query: 265 KVSDLKHVAVAGRATRAELLVAFPNVEH--LELEGHHE--SASETAAAVAIGNLLRCCXX 320
K + L +AVA FP +EH LEL+G + S + AA I +LL CC
Sbjct: 325 KANHLDDMAVAE---------VFPELEHLRLELDGAYSGWSMAAETAAATIASLLHCCPV 375
Query: 321 XXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQADLAESLDRFAXXXXXXXXXXXXXXX 380
DS N + + L + + AD +S+D F
Sbjct: 376 LRQLELNFISDLPP--DSCKNSKQVKHLFQKKCDADFGKSIDDFMRLIKFES-------- 425
Query: 381 XXXVNSMDEHLSIVGLSGRSFACLKNSLRRFVIQFRM-DRPNCIGVKLIKFFAENAIHLE 439
++ L I GLS SFACLK+SLRR +QFR+ + +C GV+LIKFFAENA+ LE
Sbjct: 426 -------NQRLDIRGLSDCSFACLKSSLRRVSLQFRLGEDSDCFGVRLIKFFAENAMFLE 478
Query: 440 EMRI 443
E+ +
Sbjct: 479 ELHV 482
>Os11g0642100 Cyclin-like F-box domain containing protein
Length = 400
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 132/263 (50%), Gaps = 52/263 (19%)
Query: 25 WLRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEELRISASAPAVXXXXXXGEVGRLV- 83
+L S++ ER R DV V+SHPAARRVEEL ++A P G+ G +V
Sbjct: 111 FLLSSENDERRGHR-----DVFDAVLSHPAARRVEELSVAAVHP------HWGDKGNIVS 159
Query: 84 ----GVFHLDLRYVPSETLRVLDLSRCSGL----RMPPAVETPRLTTLRLQACAVNVNDL 135
G++ ++ +PS TLRVLDL+ C L A PRL TLRL+ C N++DL
Sbjct: 160 SHGVGIYSINPANLPSNTLRVLDLTNCRSLAPSAAAAAAAAFPRLETLRLRHCTTNIDDL 219
Query: 136 QRVIDAAPALATVHLDSVSFDGMEHGCY-----------RLRLPAATTALVLARCRTDAE 184
R+IDAAP LA V L+ V + RLR PAA TAL L C T+
Sbjct: 220 HRIIDAAPELAAVRLEFVHLISNIRDVHFLVQLAMSSTTRLRFPAA-TALTLINCLTNG- 277
Query: 185 PYRYRRSGRPLGTSSVEIDAPGLRSFRYAGYAR-RFSLASP-PDMARADLHFFHDMYASA 242
G S IDAP LRS Y G AR +F L SP PDM LHF H +
Sbjct: 278 -----------GMSGSVIDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHYFH--- 323
Query: 243 STSRDLFWRFVRSFRGIRSLKLK 265
RD + RF+ +F ++ LKLK
Sbjct: 324 --QRD-YLRFIHNFTKVKVLKLK 343
>Os11g0642300
Length = 379
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 140/288 (48%), Gaps = 60/288 (20%)
Query: 44 DVVRDVVSHPAARRVEELRISASAPAVXXXXXXGEVGR-LVGVFHLDLRYVPSETLRVLD 102
DVV VVSHPAARRVEELR++ + + V ++ + L +PS+TLRVLD
Sbjct: 107 DVVDAVVSHPAARRVEELRVAVAVHPFGHDKINTMISSGSVRIYDIKLASLPSKTLRVLD 166
Query: 103 LSRCSGLR----MPPAVETPRLTTLRLQACAVNVNDLQRVIDAAPALATVHL--DSVSFD 156
L+ C L A P L TLRL+ C +V+L D S D
Sbjct: 167 LTNCRNLTPASAAAAATAFPWLDTLRLRHC-----------------ISVYLVSDGHSSD 209
Query: 157 GMEHGCYRLRLPAATTALVLARCRTDAEPYRYRRSGRPLGTSSVEIDAPGLRSFRYAG-- 214
RLR PAAT LVL C T T ++EI AP LRSF Y G
Sbjct: 210 VWTVWSTRLRFPAATV-LVLINCDT---------------TGAMEIYAPRLRSFTYKGDA 253
Query: 215 ---YARRFSLASPPDMARADLHFFHDMYASASTSRDLFWRFVRSFR-GIRSLKLKVSDLK 270
+ + S A PPDMA +LHF H + R + F+ +F I+ LKLK +
Sbjct: 254 VQPFDLQISPAPPPDMALVNLHFTH------AFCRHDYLHFIHNFTMAIKVLKLKAPASR 307
Query: 271 HVAVAGRATRAELLVAFPNVEHLELEGHHESASETAAAVAIGNLLRCC 318
H+ + + FPN+EHLEL+G +++ ++TAAAVA ++L CC
Sbjct: 308 HL------SDMAFVRVFPNIEHLELDGAYDTWNKTAAAVA--SILHCC 347
>Os08g0328600 Cyclin-like F-box domain containing protein
Length = 546
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 138/458 (30%), Positives = 198/458 (43%), Gaps = 84/458 (18%)
Query: 56 RRVEELRISAS--APAVXXXXXXGEVGRLVGV-----FHLDLRYVPSETLRVLDLSRCS- 107
R VEELR+ APA R ++L L ++P E VL L+ CS
Sbjct: 124 RNVEELRLECQIDAPAGAGPLSSSSPPRYTYAMPGPEYNLRLHHLPCEDFGVLHLTGCSL 183
Query: 108 ----GLRMPPAVETPRLTTLRLQACAVNVNDLQRVIDAAPALATVHLDSVSF--DGMEHG 161
L + + P LTTLRL+ C V + +LQR+I AAPALA V L+SV+F G G
Sbjct: 184 KEEIHLCLRNRIAYPCLTTLRLRRCTVPLGELQRLITAAPALADVCLESVTFPDQGSVGG 243
Query: 162 C-----YRLRLPAATTALVLARCRTDAEPYRYRRSGRPLGTSSVEIDAPGLRSFRYA--- 213
RL P A TA + C + S E+DAP L FRYA
Sbjct: 244 MTTDKRVRLHCP-AVTAFAMVNCH--------------MFCRSFELDAPALICFRYAQIS 288
Query: 214 GYARRFSLASP-PDMARADLHFFHDMYASASTSRDLFWRFVRSFRGIRSLKLKVSDLKHV 272
Y + SL P P + +A+L + + ++F + ++ LKL V
Sbjct: 289 SYEQSISLKPPAPCLEKANLE--------SISGTEIFRSLLHDMCHVKVLKLTV-----Y 335
Query: 273 AVAGRATRAELLVAFPNVEHL---ELEGH-HESASETAAAVAIGNLLRCCXXXXXXXXXX 328
++ G + E L FPN++HL EL G + S AAA AIG LL+ C
Sbjct: 336 SIVGD-IKFERLPCFPNLKHLVIEELCGFAMGNGSAAAAATAIGELLQRCPVI------- 387
Query: 329 XXXXXXERDSAMNGRYGRDLLRARQQADLAESLDRFAXXXXXXXXXXXXXXXXXXVNSMD 388
R+ + + + L + DLA L+ A V++ D
Sbjct: 388 -------RELWIRFSWSKYL---HESPDLAGYLESMA-----CRFDESDYCDRCAVSAAD 432
Query: 389 EHLSIVGLSGRSFACLKNSLRRFVIQFRMDRPNCIGVKLIKFFAENAIHLEEMRIDGGNQ 448
+ S KNSLR+ +QF+ + C V+L+ F ENA LEE IDG +Q
Sbjct: 433 RGRQELNDS------WKNSLRKVTVQFQKGKLTCSQVELVMFLVENAAVLEEFDIDGESQ 486
Query: 449 RMHDHINHMVEGWISDSSSAKKRANHESSQGIDASTPR 486
+ D IN + W + SSS++++ H + G + T R
Sbjct: 487 DVTDQINTKIATWRARSSSSREKEAHPAGVGAERPTRR 524
>Os08g0330700
Length = 499
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 167/410 (40%), Gaps = 73/410 (17%)
Query: 86 FHLDLRYVPSETLRVLDLSRCSGLRMPPA--------VETPRLTTLRLQACAVNVNDLQR 137
++L + +P E RVLD++ C + A + P LTTLRL+ C V + DLQ
Sbjct: 129 YYLSMDKLPCEDFRVLDITGCCLQEVTTAEWLWEWDWIGYPCLTTLRLRRCTVRLCDLQN 188
Query: 138 VIDAAPALATVHLDSVSFDGMEHGC-------YRLRLPAATTALVLARCRTDAEPYRYRR 190
VI AAP LA + L+SV+F C L PA T+ + C D +
Sbjct: 189 VILAAPRLAELRLESVTFPDRPSLCGFIFDEHIHLHCPAVTS-FTMVNCHIDGRTF---- 243
Query: 191 SGRPLGTSSVEIDAPGLRSFRYAGY-ARRFSL---ASPPDMARADLHFFHDMYASASTSR 246
E+DAP L FR A + FS+ ++ P +A+ DL + +
Sbjct: 244 ----------ELDAPSLICFRCAQVPSLYFSISLKSAAPCLAQVDLE--------SISGT 285
Query: 247 DLFWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHL---ELEGHHESAS 303
F + + I LKL V ++ G L + FPN++ L EL G
Sbjct: 286 ATFGPLLNTMCHISILKLTV-----YSIVGDIKFGHLPL-FPNLKRLVIEELCGFAMDGG 339
Query: 304 ETAAAVAIGNLLRCCXXXXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQADLAESLDR 363
+AAA +G++LR C + D L A A L S+ R
Sbjct: 340 LSAAATVVGDMLRRCPAIRELWIRFSWLEYLNESA-------DDHLDADLTAYLKSSICR 392
Query: 364 FAXXXXXXXXXXXXXXXXXXVNSMDEHLSIVGLSGRSF-ACLKNSLRRFVIQFRMDRPNC 422
N E + S ++F ++SLR+ VIQF+ + C
Sbjct: 393 L--------------QESDYCNHCKESDTPAAGSTQNFNGSWQSSLRKVVIQFQKGKLTC 438
Query: 423 IGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKRA 472
V+L+KF AENA LEE I+GGN DHI G +SS + A
Sbjct: 439 SQVQLVKFLAENASVLEEFEIEGGNHHGSDHIIKSKVGRWGAASSMENEA 488
>Os04g0197800
Length = 253
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 39 WVKRGDVVRDVVSHPAARRVEELRISASAPAVXXXXXXGEVGRLVGVFHLDLR--YVPSE 96
W ++ DVV VVSHP ARRVEELR++A A EV + G FHL L PSE
Sbjct: 105 WERKHDVVAGVVSHPVARRVEELRVAAIKSA-DGPSSDKEVSEMEGEFHLSLSGSTQPSE 163
Query: 97 TLRVLDLSRCSGLRMPPAVETPRLTTLRLQA--CAVNVNDLQRVIDAAPALATVHLDSVS 154
TLRVLDL+ C + + PRLTTLRL+ C V V DLQ V+D+APAL TVHL+SV
Sbjct: 164 TLRVLDLTGCGSFSLSAGMVFPRLTTLRLRLRLCVVQVKDLQGVVDSAPALTTVHLESVF 223
Query: 155 FDG-MEHGCYRLR 166
G E GC R
Sbjct: 224 LAGPKEDGCASAR 236
>Os04g0231400
Length = 413
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 18/227 (7%)
Query: 249 FWRFVRSFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEGHHES----ASE 304
FW+F+ S R +SLKL V + + + + F N++HLE+E E+ S+
Sbjct: 201 FWKFLGSLRNTKSLKLNVPAMGSIPLLDNGDN----IVFENLKHLEVECDPETDGWHHSK 256
Query: 305 TAAAVAIGNLLRCCXXXXXXXXXXXXXXXXERDSAMNGRYGRDLLRARQQADLAESLDRF 364
+A+++ LLRC E S+ + R R+ E F
Sbjct: 257 KGSAMSVATLLRC------FPVIHELKLALESTSSKFMSFRSRRARGRKSLLFTE----F 306
Query: 365 AXXXXXXXXXXXXXXXXXXVNSMDEHLSIVGLSGRSFACLKNSLRRFVIQFRMDRPNCIG 424
+ +E + GL+G F CL+N L+R V+QF+M+ NC G
Sbjct: 307 NTSRDLFNNRRTMLDDDDESSEFEEVADLPGLTGCGFDCLQNHLKRVVLQFQMEDVNCFG 366
Query: 425 VKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKR 471
V+L KFFAE L+ +++D G HIN+ V+ W + S +KR
Sbjct: 367 VRLAKFFAETCKVLDVLQVDDGVHNFRRHINNNVDKWRDNESEKQKR 413
>Os08g0332500
Length = 516
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 126/293 (43%), Gaps = 50/293 (17%)
Query: 49 VVSHPAARRVEELRISASAPAVXXXXXXGEVGRLVGVFHLDLRYVP-SETLRVLDLSRCS 107
++SH AA +++LR+ A G+ G +G++ L L +P + TLRVL L+ C
Sbjct: 107 ILSHRAAAGLQDLRVDCLPVA-----GAGDAGDTIGMYKLRLASLPCAATLRVLHLACCC 161
Query: 108 GLRMPPAVET--PRLTTLRLQACAVNVND----LQRVIDAAPALATVHLDSVSF------ 155
PP+V P LT L + C ++++ LQ ++DAAP LA + LD V
Sbjct: 162 CYSSPPSVVAAFPSLTDLAMTRCMLSLSKGGHLLQTIVDAAPRLAMLRLDRVHLLISAAK 221
Query: 156 DGMEHGCYRLRLPAATTALVLARCRTDAEPYRYRRSGRPLGTSSVEIDAPGLRSFRYAGY 215
E RLR P TT LVL + E ++++DAP L SF Y G+
Sbjct: 222 TKEETAVLRLRCPTVTT-LVLVAVTSRIE--------------ALQLDAPSLVSFSYGGH 266
Query: 216 ARRFSLASPP-DMARADL-----HFFHDMYASASTSRDLFWRFVRSFRGIRSLKLKVSDL 269
SLA PP ++A D+ FF Y R +RS G + ++ L
Sbjct: 267 PMAISLAPPPANLALVDVDISRPSFFTWKYEPVC-------RVLRSLGGGDTTTMRAMTL 319
Query: 270 KHVAVAGRATRAEL--LVAFPNVEHLELEGH--HESASETAAAVAIGNLLRCC 318
+ V L FPN+ L LE H + A+ LL+ C
Sbjct: 320 RVYCVDDILDDGGGGALPVFPNLAFLHLEAQYLHSRYQTPISLSAMAKLLQSC 372
>Os08g0330900 Cyclin-like F-box domain containing protein
Length = 733
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 136/316 (43%), Gaps = 43/316 (13%)
Query: 26 LRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEELRISASAPAVXXXXXXGEVGRLVGV 85
LRL+ + K VV V PAA RVEELR+ + E G G
Sbjct: 94 LRLASEEIEGGAAEEKCAGVVDAVQDAPAAARVEELRVRCDV-SWFCRYGSCESGSSGGT 152
Query: 86 FHLDLRYVP--SETLRVLDLSRCSGLRMPPAVETPRLTT----LRLQACAVNVNDLQRVI 139
+ L L +P + TLRVL + R+ + +RL V+ + LQRVI
Sbjct: 153 WRLQLGSLPCAAATLRVLHANDVGVERLGDGGGVGVVLPLLEEMRLVEATVSPDTLQRVI 212
Query: 140 DAAPALATVHLDSV---SFDG-----MEHGCYRLRL--PAATTALVLARCRTDAEPYRYR 189
DAAP LA + LD + S DG + G +RL+L PA T ++ DA R
Sbjct: 213 DAAPRLANLWLDGIILTSNDGSRRLYLADG-FRLQLRGPALTELALIEYYSRDAASSSTR 271
Query: 190 RSGRPLGTSSVEIDAPGLRSFRYAGYARRFSLASP-PDMARADLHFF-HDMYASASTSRD 247
+ P + + +SL SP PD A ADLHF H Y +
Sbjct: 272 PACAP------------------SSFPGHYSLTSPAPDFASADLHFHDHRSYGDKDPNNL 313
Query: 248 L--FWRFVRSFRGIRSLKLKVSDL-KHVAVAGRATRAELLV--AFPNVEHLELEGHHESA 302
W +R G+R LKL++ +++ + A +V FPN+E+LEL+ H +
Sbjct: 314 TVPLWSCLRHLHGVRVLKLQLDFYAEYITMEADACDGGGVVPATFPNLEYLELDAHCKDD 373
Query: 303 SETAAAVAIGNLLRCC 318
+ A + + ++LR C
Sbjct: 374 HDMATELTVASVLRWC 389
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,454,145
Number of extensions: 600367
Number of successful extensions: 2004
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1944
Number of HSP's successfully gapped: 15
Length of query: 495
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 390
Effective length of database: 11,553,331
Effective search space: 4505799090
Effective search space used: 4505799090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)