BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0538400 Os11g0538400|AK109924
(653 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0538400 Cyclin-like F-box domain containing protein 1070 0.0
Os11g0538700 471 e-133
Os11g0539000 Conserved hypothetical protein 323 3e-88
Os11g0641900 253 5e-67
Os11g0642000 229 6e-60
Os11g0642500 197 2e-50
Os04g0197800 172 5e-43
Os11g0642100 Cyclin-like F-box domain containing protein 137 3e-32
Os11g0642300 124 3e-28
Os08g0328600 Cyclin-like F-box domain containing protein 87 5e-17
Os08g0332500 85 2e-16
Os08g0330900 Cyclin-like F-box domain containing protein 76 1e-13
>Os11g0538400 Cyclin-like F-box domain containing protein
Length = 653
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/653 (84%), Positives = 549/653 (84%)
Query: 1 MLALMLHLPVLHERXXXXXXXXXXXXXXPGLPRLCRQRPCRAVPDGGQEEPQLHVVXXXX 60
MLALMLHLPVLHER PGLPRLCRQRPCRAVPDGGQEEPQLHVV
Sbjct: 1 MLALMLHLPVLHERVTVEFDEVDGDVDVPGLPRLCRQRPCRAVPDGGQEEPQLHVVRAPR 60
Query: 61 XXXXXXXXXXXXXXXXXDELEPAGSPRHHRGQSVRAGANRISDLPDDLIQRILHFAPARE 120
DELEPAGSPRHHRGQSVRAGANRISDLPDDLIQRILHFAPARE
Sbjct: 61 RPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVRAGANRISDLPDDLIQRILHFAPARE 120
Query: 121 AAXXXXXXXXXXXXXXXXXAVNLAVLVRRRDDFFSLRDAFVRSXXXXXXXXXXXXVRRLT 180
AA AVNLAVLVRRRDDFFSLRDAFVRS VRRLT
Sbjct: 121 AASTGLLSSRWRSLWRSTGAVNLAVLVRRRDDFFSLRDAFVRSAHAALAAAAGGHVRRLT 180
Query: 181 MHVETERLPVQLTADAFLHRDAEDWGRRHDVVAGVVSHPXXXXXXXXXXXXXXSADGPSS 240
MHVETERLPVQLTADAFLHRDAEDWGRRHDVVAGVVSHP SADGPSS
Sbjct: 181 MHVETERLPVQLTADAFLHRDAEDWGRRHDVVAGVVSHPAARRVEELRVAAVRSADGPSS 240
Query: 241 DREVTEMEEGEFHLSLGGSGGTQPSTETLRVLDLTGCGGVSXXXXXXXXXXXXXXXXXCV 300
DREVTEMEEGEFHLSLGGSGGTQPSTETLRVLDLTGCGGVS CV
Sbjct: 241 DREVTEMEEGEFHLSLGGSGGTQPSTETLRVLDLTGCGGVSLPAGAALPRLTTLRLRLCV 300
Query: 301 VQVEDLQGVVDSAPALATVHLESVFLAGTKEDGCCARLRFPAATALVLAKCRGHGSHHNG 360
VQVEDLQGVVDSAPALATVHLESVFLAGTKEDGCCARLRFPAATALVLAKCRGHGSHHNG
Sbjct: 301 VQVEDLQGVVDSAPALATVHLESVFLAGTKEDGCCARLRFPAATALVLAKCRGHGSHHNG 360
Query: 361 DDDASDCEGAMEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTA 420
DDDASDCEGAMEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTA
Sbjct: 361 DDDASDCEGAMEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTA 420
Query: 421 VLRARFWRFLHNFRGVKSLKLKVTYLKAIAVTGNGKGILLPPLHGVERLDVAALHDPASE 480
VLRARFWRFLHNFRGVKSLKLKVTYLKAIAVTGNGKGILLPPLHGVERLDVAALHDPASE
Sbjct: 421 VLRARFWRFLHNFRGVKSLKLKVTYLKAIAVTGNGKGILLPPLHGVERLDVAALHDPASE 480
Query: 481 TSTVAIANLLRCCPNLRDLVLRLSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRR 540
TSTVAIANLLRCCPNLRDLVLRLSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRR
Sbjct: 481 TSTVAIANLLRCCPNLRDLVLRLSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRR 540
Query: 541 GWXXXXXXXXXTKISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFRNDERSWLGV 600
GW TKISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFRNDERSWLGV
Sbjct: 541 GWPKPPPPPPPTKISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFRNDERSWLGV 600
Query: 601 SLIKFFAENAICLEEMRVDGGNERMRDHINRRVERWIVESGMRCFRVLPLERR 653
SLIKFFAENAICLEEMRVDGGNERMRDHINRRVERWIVESGMRCFRVLPLERR
Sbjct: 601 SLIKFFAENAICLEEMRVDGGNERMRDHINRRVERWIVESGMRCFRVLPLERR 653
>Os11g0538700
Length = 584
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 321/609 (52%), Positives = 359/609 (58%), Gaps = 80/609 (13%)
Query: 96 AGANRISDLPDDLIQRILHFAPAREAAXXXXXXXXXXXXXXXXXAVNLAVLVRRRDD--F 153
A +RISDLPDDL+QR+LHF PA+EAA AVNLAV VRR + F
Sbjct: 5 AAVDRISDLPDDLLQRVLHFVPAKEAASTSLLSSRWRSTG----AVNLAVHVRRDQEREF 60
Query: 154 FSLRDAFVRSXXXXXXXXXXXXVRRLTMHVETERLPV--QLTADAFLHRDAEDWGRRHDV 211
FS RDAFVRS VRRLTMHVETER+ + QLTADAFLHRD EDW R+HDV
Sbjct: 61 FSARDAFVRSAHAALAAAAGH-VRRLTMHVETERMRICMQLTADAFLHRDPEDWERKHDV 119
Query: 212 VAGVVSHPXXXXXXXX-XXXXXXSADGPSSDREVTEMEEGEFHLSLGGSGGTQPSTETLR 270
VAGVVSHP A PS D EVT EGEF L L QPS ETLR
Sbjct: 120 VAGVVSHPAARRVEELRVAAAVVEAYWPSFDGEVTSSSEGEFRLCLDA----QPS-ETLR 174
Query: 271 VLDLTGCGGVSXXXXXXXXXX----XXXXXXXCVVQVEDLQGVVDSAPALATVHLESVFL 326
VLDL GCGG+S C +Q+ DLQG++D+AP LATVHLESVFL
Sbjct: 175 VLDLAGCGGLSAAAAAAGVVALPRLTTLRLRLCNLQISDLQGIIDAAPELATVHLESVFL 234
Query: 327 AGTKEDGCCARLRFPAAT-ALVLAKCRGHGSHHNGDDDASDCEGAMEIDAPRLRSFKYTG 385
AGT E+GC RLRFPAAT AL + C G C GA EIDAPRLRSFKYTG
Sbjct: 235 AGTAEEGC-VRLRFPAATTALAMINCGADCYACGG------CYGATEIDAPRLRSFKYTG 287
Query: 386 LPRRFSLISPAAD-------MERADLHFLHDDGPHHYRDTTAVLRARFWRFLHNFRGVKS 438
RRFSL+SPAA + RA+LHFL D H D +RA FW FLHNFRG KS
Sbjct: 288 FARRFSLVSPAAAPPPDDTVVARAELHFL-DHFHHKDADAADTVRANFWLFLHNFRGAKS 346
Query: 439 LKLKVTYLKAIAVTGNGKGILLP--PLHGVERLDVAALHDPASETS--------TVAIAN 488
LKLKV++LK IAV G PLHGVERLD+ A H A+ + TVAIAN
Sbjct: 347 LKLKVSHLKHIAVAGRAAARRALLLPLHGVERLDLTARHADAAASGGRTTTTSTTVAIAN 406
Query: 489 LLRCCPNLRDLVLRLS-TVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWXXXXX 547
LLRCCPNLRDL +RL+ VP STKNG Y D+LR R +ADLDES
Sbjct: 407 LLRCCPNLRDLAIRLTRMVPHGSTKNGVYAHDLLRERRRADLDESA-----------RRF 455
Query: 548 XXXXTKISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFRNDERS-WLGVSLIKFF 606
+ S + LDD GDIHGLSGR F CLRSSL RVGIQF DE + +GV LIKFF
Sbjct: 456 ARRRRRGSSTKKDLDDVSGDIHGLSGRIFHCLRSSLRRVGIQFHLDEHNDCIGVRLIKFF 515
Query: 607 AENAICLEEMRVDGGNERMRDHINRRVERWI----------------------VESGMRC 644
AENAICLEEM +DGGN+RM DHIN V+RWI +ES M
Sbjct: 516 AENAICLEEMCIDGGNQRMHDHINHMVQRWIAGRRCSSAKSENGTGSSSQPDVLESSMPR 575
Query: 645 FRVLPLERR 653
FRV PL+RR
Sbjct: 576 FRVSPLQRR 584
>Os11g0539000 Conserved hypothetical protein
Length = 495
Score = 323 bits (828), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 222/486 (45%), Positives = 271/486 (55%), Gaps = 52/486 (10%)
Query: 198 LHRDAEDWGRRHDVVAGVVSHPXXXXXXXXXXXXXXSADGPSSDREVTEMEEGE----FH 253
+ R+A+ W +R DVV VVSHP SA P+ D + + E G FH
Sbjct: 32 VEREADRWVKRGDVVRDVVSHPAARRVEELRI----SASAPAVDDDDDDGEVGRLVGVFH 87
Query: 254 LSLGGSGGTQPSTETLRVLDLTGCGGVSXXXXXXXXXXXXXXXXXCVVQVEDLQGVVDSA 313
L L +ETLRVLDL+ C G+ C V V DLQ V+D+A
Sbjct: 88 LDL-----RYVPSETLRVLDLSRCSGLRMPPAVETPRLTTLRLQACAVNVNDLQRVIDAA 142
Query: 314 PALATVHLESVFLAGTKEDGCCARLRFPAAT-ALVLAKCRGHGSHHNGDDDASDC-EGAM 371
PALATVHL+SV G + C RLR PAAT ALVLA+CR + ++
Sbjct: 143 PALATVHLDSVSFDGMEHG--CYRLRLPAATTALVLARCRTDAEPYRYRRSGRPLGTSSV 200
Query: 372 EIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTAVLRARFWRFLH 431
EIDAP LRSF+Y G RRFSL SP DM RADLHF HD + + R FWRF+
Sbjct: 201 EIDAPGLRSFRYAGYARRFSLASPP-DMARADLHFFHD-----MYASASTSRDLFWRFVR 254
Query: 432 NFRGVKSLKLKVTYLKAIAVTGNG-KGILLPPLHGVERLDVAALHDPASETST-VAIANL 489
+FRG++SLKLKV+ LK +AV G + LL VE L++ H+ ASET+ VAI NL
Sbjct: 255 SFRGIRSLKLKVSDLKHVAVAGRATRAELLVAFPNVEHLELEGHHESASETAAAVAIGNL 314
Query: 490 LRCCPNLRDLVLRLSTVPP---DSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWXXXX 546
LRCCP R L L L+T PP DS NG Y RD+LR R QADL ES+ R ARRR
Sbjct: 315 LRCCPAARHLALHLATAPPRERDSAMNGRYGRDLLRARQQADLAESLDRFARRRRRKPNP 374
Query: 547 XXXXXTK--ISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFRNDERSWLGVSLIK 604
++ M++ L I GLSGRSFACL++SL R IQFR D + +GV LIK
Sbjct: 375 PPPPPPPTPVNSMDEHLS-----IVGLSGRSFACLKNSLRRFVIQFRMDRPNCIGVKLIK 429
Query: 605 FFAENAICLEEMRVDGGNERMRDHINRRVERWI-----------------VESGMRCFRV 647
FFAENAI LEEMR+DGGN+RM DHIN VE WI +++ FR+
Sbjct: 430 FFAENAIHLEEMRIDGGNQRMHDHINHMVEGWISDSSSAKKRANHESSQGIDASTPRFRL 489
Query: 648 LPLERR 653
LPLERR
Sbjct: 490 LPLERR 495
>Os11g0641900
Length = 600
Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 214/625 (34%), Positives = 280/625 (44%), Gaps = 93/625 (14%)
Query: 96 AGANRISDLPDDLIQRILHFAPAREAAXXXXXXXXXXXXXXXXXAVNLAVLVRRRD---- 151
A +R+S L DDL++RILHF P+REAA VNLAV V D
Sbjct: 2 AADDRLSVLSDDLLRRILHFVPSREAASTSLLSRRWGSLWRSTGTVNLAVRVVYDDVSGD 61
Query: 152 --DFFSLRDAFVRSXXXXXXXXXXXX-VRRLTMHVETERLPVQLTADAFLHRDAEDWGRR 208
F S RDAFVR+ V RLT++V L D FL+ G
Sbjct: 62 DEAFSSRRDAFVRASQAALAAAAAGAGVTRLTLNVAGRCLS---GVDKFLNYGGGGGGEE 118
Query: 209 HDVVAGVVSHPXXXXXXXXXXXXX---XSADGPSSD--REVTEMEEGEFHLSLGGSGGTQ 263
+V VVSHP DG +E + + + S +
Sbjct: 119 IGIVDAVVSHPAARHVEELRVGVAGPMYRTDGAEQRPWQEARRWRSDDIY-TYTLSFASL 177
Query: 264 PSTETLRVLDLTGCGGVSXXXXXXXXXXX-----XXXXXXCVVQVEDLQGVVDSAPALAT 318
PS TLRVLD+T C C V++ LQ ++D+APALAT
Sbjct: 178 PSA-TLRVLDITECNFSDSKLALPDAGVAFPRLDTLRLRLCAVRLAHLQRLIDAAPALAT 236
Query: 319 VHLESVFL------------AGTKEDGCCARLRFPAATALVLAKCRGHGSHHNGDDDASD 366
VHLESV+ G LR PAAT L + C G S+ N S
Sbjct: 237 VHLESVYFEFNIYLDYYGVYGGLVAVESRLLLRCPAATELAMEFC-GSSSYIN-----SH 290
Query: 367 CEGAMEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTAVLRARF 426
+G + IDAP+LRSF+YTG PRRF L SPA +M ++HF+ DG H + D R
Sbjct: 291 LDGGIGIDAPKLRSFRYTGHPRRFYLESPAPEMTAVNIHFI--DGDHRFAD-------RL 341
Query: 427 WRFLHNFRGVKSLKLKVTYLKAIAVTGNG-KGILLPPLHGVERLDVAALH-----DPASE 480
WRFL NF VK LKL V L +AV G + LL +ERL++ A+ +
Sbjct: 342 WRFLGNFTNVKILKLTVQELGHLAVAGKARRAELLCKFGNLERLELEAVRKPTKTKAPAP 401
Query: 481 TSTVAIANLLRCCPNLRDLVLRLSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRR 540
VAIANLL CCP L DL L+L + +KN +++ D D+SV R +
Sbjct: 402 PPAVAIANLLHCCPALVDLSLKLKMLNYAWSKNNSMYLSSFHAKFKPDFDKSVGLFMRHK 461
Query: 541 GWXXXXXXXXXTKISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFR-NDERSWLG 599
S +++ DD +I GLSG+SFACL SL RV +QF+ + G
Sbjct: 462 S------KMTAVSSSLIDEHHDDKFSNISGLSGKSFACLNRSLRRVNLQFQLGSASNCFG 515
Query: 600 VSLIKFFAENAICLEEMRVDGGNERMRDHINRRVERWI---------------------- 637
V LI+FFA+NA+ LEEM +D GN ++ +H+N VERW+
Sbjct: 516 VRLIRFFAQNAMVLEEMCIDSGNRKLCEHMNLNVERWVGVDSSKIRLKDKNLTGSSWEFS 575
Query: 638 ---------VESGMRCFRVLPLERR 653
E F+VLPLERR
Sbjct: 576 RIHPDSAPEFERNATSFKVLPLERR 600
>Os11g0642000
Length = 652
Score = 229 bits (583), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 202/611 (33%), Positives = 275/611 (45%), Gaps = 84/611 (13%)
Query: 99 NRISDLPDDLIQRILHFAPAREAAXXXXXXXXXXXXXXXXXAVNLAV-----------LV 147
+R+SDLPDDL++RILHF P REAA AVNL LV
Sbjct: 8 DRLSDLPDDLLRRILHFVPFREAASTSLLSRRWGSLWRSSGAVNLVEHVEDEEEEDVNLV 67
Query: 148 RRRDDFFSL--------------------RDAFVRSXXXXXXXX----XXXXVRRLTMHV 183
+D RDAF+R+ V RL++ V
Sbjct: 68 EHVEDEEDFDLGDEEDDDEVTAEEPSARRRDAFLRAAGAALTAADGDISCDHVTRLSVDV 127
Query: 184 ETERLPVQLTADAFLHRD----AEDWGRRHDVVAGVVSHPXXXXXXXXXXXXXXSADGPS 239
+ P FL D A D DV+ VVSHP +D
Sbjct: 128 DG---PDGYCITNFLDCDESAAAYDIFTGMDVLHTVVSHPAARLVEELCLRVASESDSYG 184
Query: 240 SDREVTEMEEGEFHLSLGGSGGTQP--STETLRVLDLTGCGGVSXXXXXXXXXX------ 291
R + EE E LG G + E LRVLD+ GC +S
Sbjct: 185 VHRRRRDKEE-EPSTDLGVYGLSLAFLPFEKLRVLDIAGCNNLSLPPPPAAAAAAAAFPR 243
Query: 292 -XXXXXXXCVVQVEDLQGVVDSAPALATVHLESVFL----------AGTKEDGCCAR--L 338
C +V LQ ++D+AP LAT HLESV ++ G C+ L
Sbjct: 244 LQTLRLRRCAAKVTHLQRLIDAAPGLATAHLESVVFNTDDNNDNQSYNHRDTGACSSISL 303
Query: 339 RFPAATALVLAKC-----RGHGSHHNGDDDASDCEGAMEIDAPRLRSFKYTGLPRRFSLI 393
R PAAT+L L C + + +H DD C G++ IDAP+LRSF+Y GLPR F L
Sbjct: 304 RCPAATSLALEWCGSTDYKFYYAHSRYSDDDDSCGGSIAIDAPKLRSFRYKGLPRPFHLK 363
Query: 394 SPAADMERADLHF-LHDDGPHHYRDTTAVLRARFWRFLHNFRGVKSLKLKVTYLKAIAVT 452
SPA + LH + ++ ++ TA R WRF+ NF K+LKLKV L +AV
Sbjct: 364 SPAPETTTTTTAVSLHFNSDYYLKEDTA--RVHSWRFIGNFTNAKTLKLKVDNLDHLAVA 421
Query: 453 GNGKG----ILLPPLHGVERLDVAALHDPASET--STVAIANLLRCCPNLRDLVLRLSTV 506
+LP L VE L+ A L + T S VAIANLLRCCP L + ++L++
Sbjct: 422 DKASRSKLLCVLPNLVSVE-LEAAQLMNTKMNTKKSAVAIANLLRCCPVLSEFTMKLNSA 480
Query: 507 PPDSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWXXXXXXXXXTKISCMNQSLDDAGG 566
+T Y + R R+Q D +SV RR+ ++ ++ +D+
Sbjct: 481 ---TTCTDRYWPN-HRGRFQPDFYDSVDHFMRRKSNTTTAISSIDSRKGDGDRHVDEVP- 535
Query: 567 DIHGLSGRSFACLRSSLTRVGIQFRNDERSWLGVSLIKFFAENAICLEEMRVDGGNERMR 626
DI LS RSF CL+ SL +V ++F+ GV L+KFFA+NA+ LEEMR+D G+ ++
Sbjct: 536 DIPALSRRSFTCLQRSLKKVSLKFKWSGDDCFGVQLVKFFAQNAMVLEEMRIDSGDRKLC 595
Query: 627 DHINRRVERWI 637
DH+N VERW+
Sbjct: 596 DHMNLNVERWV 606
>Os11g0642500
Length = 493
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 196/550 (35%), Positives = 245/550 (44%), Gaps = 93/550 (16%)
Query: 94 VRAGANRISDLPDDLIQRILHFAPAREAAXXXXXXXXXXXXXXXXXAVNLAVLVRRRDDF 153
+ AG +R+S LPDDL+ R+LHFAPA+EAA AVNLA V
Sbjct: 1 MSAGDDRLSALPDDLLIRVLHFAPAKEAASTSLLSRRFGALWRSSGAVNLAACVPDG--- 57
Query: 154 FSLRDAFVRSXXXXXXXXXXXXVRRLTMHVETERLPVQLTADAFLHRDAEDWGRRHDVVA 213
RDAFVR+ V RLT+HVE + D ++ G HDV+
Sbjct: 58 ---RDAFVRA-AEAALAAADRAVTRLTLHVEGD--------DECSTYNSLRVG-DHDVLD 104
Query: 214 GVVSHPXXXXXXXXXXXXXXSADGPSSDREVTEMEEGEFHLSLGGSGGTQPSTETLRVLD 273
VV+HP D V M++ F L S + PS TLRVLD
Sbjct: 105 AVVAHPAARRVEELRVAAVHRGQPDEHDDAV--MDDDVFLYILRFS--SLPSN-TLRVLD 159
Query: 274 LTGCGGVS-------XXXXXXXXXXXXXXXXXCVVQVEDLQGVVDSAPALATVHLESVFL 326
LT C S C V+ L G+VD+AP LATVHLE V L
Sbjct: 160 LTRCHNFSPPPPPRTASAAVAFPRLTTLRLRHCTYSVKHLHGIVDAAPELATVHLEFVLL 219
Query: 327 AGTKED-----GCCARLRFPAATALVLAKCRGHGSHHNGDDDASDCEGA----MEIDAPR 377
+ + LRFP+AT L L CRG EGA MEI A R
Sbjct: 220 SSDRHRRFGPVTWNTGLRFPSATVLALIHCRGE-------------EGAPGRSMEITALR 266
Query: 378 LRSFKYTGLPRRFSLISP----AADMERADLHFLHDDGPHHYRDTTAVLRARFWRFLHNF 433
LRSF Y G F L SP + ADLHF H G + F+HNF
Sbjct: 267 LRSFTYKGEAVLFDLTSPPSPDTTTVVAADLHFTHGMGRC----------VDYSHFIHNF 316
Query: 434 RGVKSLKLKVTYLKAIAVTGNGKGILLPPLHGVERLDVAALHDPAS---ETSTVAIANLL 490
K L+LK +L +AV + P L + RL++ + S ET+ IA+LL
Sbjct: 317 TNAKVLRLKANHLDDMAVAE-----VFPELEHL-RLELDGAYSGWSMAAETAAATIASLL 370
Query: 491 RCCPNLRDLVLR-LSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWXXXXXXX 549
CCP LR L L +S +PPDS KN + + +++ AD +S+ R +
Sbjct: 371 HCCPVLRQLELNFISDLPPDSCKNSKQVKHLFQKKCDADFGKSIDDFMRLIKFES----- 425
Query: 550 XXTKISCMNQSLDDAGGDIHGLSGRSFACLRSSLTRVGIQFRNDERS-WLGVSLIKFFAE 608
NQ L DI GLS SFACL+SSL RV +QFR E S GV LIKFFAE
Sbjct: 426 --------NQRL-----DIRGLSDCSFACLKSSLRRVSLQFRLGEDSDCFGVRLIKFFAE 472
Query: 609 NAICLEEMRV 618
NA+ LEE+ V
Sbjct: 473 NAMFLEELHV 482
>Os04g0197800
Length = 253
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/193 (55%), Positives = 114/193 (59%), Gaps = 31/193 (16%)
Query: 146 LVRRRDDFFSLRDAFVRSXXXXXXXXXXXXVRRLTMHVETERLPVQLTADAFLHRDAEDW 205
L+RR DDFFSLRD FVRS ADAFL D +DW
Sbjct: 71 LIRRGDDFFSLRDEFVRSAHAAL-------------------------ADAFLPCDPQDW 105
Query: 206 GRRHDVVAGVVSHPXXXXXXXXXXXXXXSADGPSSDREVTEMEEGEFHLSLGGSGGTQPS 265
R+HDVVAGVVSHP SADGPSSD+EV+EME GEFHLSL GS TQPS
Sbjct: 106 ERKHDVVAGVVSHPVARRVEELRVAAIKSADGPSSDKEVSEME-GEFHLSLSGS--TQPS 162
Query: 266 TETLRVLDLTGCGGVSXXXXXX--XXXXXXXXXXXCVVQVEDLQGVVDSAPALATVHLES 323
ETLRVLDLTGCG S CVVQV+DLQGVVDSAPAL TVHLES
Sbjct: 163 -ETLRVLDLTGCGSFSLSAGMVFPRLTTLRLRLRLCVVQVKDLQGVVDSAPALTTVHLES 221
Query: 324 VFLAGTKEDGCCA 336
VFLAG KEDGC +
Sbjct: 222 VFLAGPKEDGCAS 234
>Os11g0642100 Cyclin-like F-box domain containing protein
Length = 400
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 158/385 (41%), Gaps = 78/385 (20%)
Query: 97 GANRISDLPDDLIQRILHFAPAREAAXXXXXXXXXXXXXXXXXAVNLAVLVR------RR 150
G +R+SDLPD+L+ RILHFA A+EAA AVNLA V R
Sbjct: 4 GDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRYIGR 63
Query: 151 DDFFSLRDAFVRSXXXXXXXXXXX--XVRRLTMHVETERLPVQLTADAFLHRDAEDWGRR 208
+ RDAFVR+ V RLT+H+E ++ A L + ++
Sbjct: 64 AALIARRDAFVRAAEAALSAAAAADHRVTRLTVHIECDKEDKGSIASFLLSSENDERRGH 123
Query: 209 HDVVAGVVSHPXXXXXXXXXXXXXXSADGPSSDREVTEMEEGEFHLSLGGSGGTQPS--- 265
DV V+SHP + R V E+ H G G S
Sbjct: 124 RDVFDAVLSHP--------------------AARRVEELSVAAVHPHWGDKGNIVSSHGV 163
Query: 266 -----------TETLRVLDLTGCGGVSXXXXXXXXXX----XXXXXXXCVVQVEDLQGVV 310
+ TLRVLDLT C ++ C ++DL ++
Sbjct: 164 GIYSINPANLPSNTLRVLDLTNCRSLAPSAAAAAAAAFPRLETLRLRHCTTNIDDLHRII 223
Query: 311 DSAPALATVHLESVFLAGTKED---------GCCARLRFPAATALVLAKCRGHGSHHNGD 361
D+AP LA V LE V L D RLRFPAATAL L C +G
Sbjct: 224 DAAPELAAVRLEFVHLISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGG----- 278
Query: 362 DDASDCEGAMEIDAPRLRSFKYTGLPR-RFSLISPAADMERADLHFLHDDGPHHYRDTTA 420
G++ IDAPRLRS Y G R +F L SPA DM+ LHF H H RD
Sbjct: 279 -----MSGSV-IDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHY---FHQRD--- 326
Query: 421 VLRARFWRFLHNFRGVKSLKLKVTY 445
+ RF+HNF VK LKLK +
Sbjct: 327 -----YLRFIHNFTKVKVLKLKAEH 346
>Os11g0642300
Length = 379
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 184/447 (41%), Gaps = 83/447 (18%)
Query: 92 QSVRAGANRISDLPDDLIQRILHFAPAREAAXXXXXXXXXXXXXXXXXAVNLAVLVRRRD 151
++ AG +R+S LPDDL+ R+LHFA A EAA AVNLA V
Sbjct: 1 MAIGAGGDRLSALPDDLLLRVLHFANAVEAASTSLLSRRFGALWRSSGAVNLAARVPGAG 60
Query: 152 DFFSLRDAFVRSXXXXXXXXXXXXVRRLTMHVETERLPVQLTADAFLHRDAEDWGRRHDV 211
RDAFVR+ V RLT+HV+ T+ L RD HDV
Sbjct: 61 G----RDAFVRAADAALAAAGRV-VTRLTLHVDDGDHSGYCTSMYNLLRD-------HDV 108
Query: 212 VAGVVSHPXXXXXXXXXXXXXXSADGPSSDREVTEMEEGEFHLSLGGSGGTQPSTETLRV 271
V VVSHP G D+ T + G + + PS +TLRV
Sbjct: 109 VDAVVSHPAARRVEELRVAVAVHPFG--HDKINTMISSGSVRI-YDIKLASLPS-KTLRV 164
Query: 272 LDLTGCGGVSXXXXXXXXXXXXXXXXXCVVQVEDLQGVVDSAPALATV---HLESVFLAG 328
LDLT C ++ + P L T+ H SV+L
Sbjct: 165 LDLTNCRNLTP---------------------ASAAAAATAFPWLDTLRLRHCISVYLVS 203
Query: 329 TKEDG-----CCARLRFPAATALVLAKCRGHGSHHNGDDDASDCEGAMEIDAPRLRSFKY 383
RLRFPAAT LVL C D GAMEI APRLRSF Y
Sbjct: 204 DGHSSDVWTVWSTRLRFPAATVLVLINC--------------DTTGAMEIYAPRLRSFTY 249
Query: 384 TG-LPRRFSL-ISPA--ADMERADLHFLHDDGPHHYRDTTAVLRARFWRFLHNFRGVKSL 439
G + F L ISPA DM +LHF H A R + F+HNF ++
Sbjct: 250 KGDAVQPFDLQISPAPPPDMALVNLHFTH-----------AFCRHDYLHFIHNF----TM 294
Query: 440 KLKVTYLKAIAVTGNGKGILLPPLHGVERLDVAALHDPASETSTVAIANLLRCCPNLRDL 499
+KV LKA A + +E L++ +D ++T+ A+A++L CCP LR+L
Sbjct: 295 AIKVLKLKAPASRHLSDMAFVRVFPNIEHLELDGAYDTWNKTAA-AVASILHCCPVLREL 353
Query: 500 VLRLSTVPPDSTKNGGYCRDVLRRRWQ 526
L L ++KN + RR Q
Sbjct: 354 KLNLV----GTSKNSKRVQHFFRRNSQ 376
>Os08g0328600 Cyclin-like F-box domain containing protein
Length = 546
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 147/353 (41%), Gaps = 76/353 (21%)
Query: 299 CVVQVEDLQGVVDSAPALATVHLESVFLAGTKEDGCCA-----RLRFPAATALVLAKCRG 353
C V + +LQ ++ +APALA V LESV G RL PA TA + C
Sbjct: 208 CTVPLGELQRLITAAPALADVCLESVTFPDQGSVGGMTTDKRVRLHCPAVTAFAMVNCHM 267
Query: 354 HGSHHNGDDDASDCEGAMEIDAPRLRSFKY---TGLPRRFSLISPAADMERADLHFLHDD 410
+ E+DAP L F+Y + + SL PA +E+A+L +
Sbjct: 268 FCR-------------SFELDAPALICFRYAQISSYEQSISLKPPAPCLEKANLESI--- 311
Query: 411 GPHHYRDTTAVLRARFWRFLHNFRGVKSLKLKVTYLKAIAVTGNGKGILLPPLHGVERLD 470
T + R+ LH+ VK LKL V ++ G+ K LP ++ L
Sbjct: 312 ------SGTEIFRS----LLHDMCHVKVLKLTV-----YSIVGDIKFERLPCFPNLKHLV 356
Query: 471 VA-----ALHDPASETSTVAIANLLRCCPNLRDLVLRLSTVPP--DSTKNGGYCRDVLRR 523
+ A+ + ++ + AI LL+ CP +R+L +R S +S GY + R
Sbjct: 357 IEELCGFAMGNGSAAAAATAIGELLQRCPVIRELWIRFSWSKYLHESPDLAGYLESMACR 416
Query: 524 RWQADLDESVHRLARRRGWXXXXXXXXXTKISCMNQSLDDAGGDIHGLSGRSFACLRSSL 583
++D + A RG Q L+D+ ++SL
Sbjct: 417 FDESDYCDRCAVSAADRG----------------RQELNDS--------------WKNSL 446
Query: 584 TRVGIQFRNDERSWLGVSLIKFFAENAICLEEMRVDGGNERMRDHINRRVERW 636
+V +QF+ + + V L+ F ENA LEE +DG ++ + D IN ++ W
Sbjct: 447 RKVTVQFQKGKLTCSQVELVMFLVENAAVLEEFDIDGESQDVTDQINTKIATW 499
>Os08g0332500
Length = 516
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 163/406 (40%), Gaps = 58/406 (14%)
Query: 261 GTQPSTETLRVLDLTGCGGVSX--XXXXXXXXXXXXXXXXCVVQVED----LQGVVDSAP 314
+ P TLRVL L C S C++ + LQ +VD+AP
Sbjct: 144 ASLPCAATLRVLHLACCCCYSSPPSVVAAFPSLTDLAMTRCMLSLSKGGHLLQTIVDAAP 203
Query: 315 ALATVHLESVFL----AGTKEDGCCARLRFPAATALVLAKCRGHGSHHNGDDDASDCEGA 370
LA + L+ V L A TKE+ RLR P T LVL A
Sbjct: 204 RLAMLRLDRVHLLISAAKTKEETAVLRLRCPTVTTLVLVAVTSRIE-------------A 250
Query: 371 MEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDG-PHHYRDTTAVLRARFWRF 429
+++DAP L SF Y G P SL P A++ D+ Y VLR+
Sbjct: 251 LQLDAPSLVSFSYGGHPMAISLAPPPANLALVDVDISRPSFFTWKYEPVCRVLRSLGG-- 308
Query: 430 LHNFRGVKSLKLKVTYLKAIAVTGNGKGILLPPLHGVERLDVAALHD-PASETSTVAIAN 488
+ ++++ L+V + I G G + + P L+ LH + S A+A
Sbjct: 309 -GDTTTMRAMTLRVYCVDDILDDGGGGALPVFPNLAFLHLEAQYLHSRYQTPISLSAMAK 367
Query: 489 LLRCCPNLRDLVLRLSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWXXXXXX 548
LL+ CP + +L LRL+T DS + RR + S+ R
Sbjct: 368 LLQSCPAVSELRLRLTT-KDDSHSHPVSEEQRFNRRISGN---SIGR------------- 410
Query: 549 XXXTKISCMNQSLDDAGGDI----HGLSGRSFACLRSSLTRVGIQFRNDERSWLGVSLIK 604
+I + S GD+ +S + CL ++ +V ++F E V L K
Sbjct: 411 ----RIESSSSSSSKDEGDLELKRQRVSEPAIECLEKTVRKVTMEFTAKEMDSFPVHLTK 466
Query: 605 FFAENAICLEEMRVDGGNERMRDHINRRVERWIVESGMRCFRVLPL 650
F ENA+ LEE+ VD + D ++VE+W +S R R LP+
Sbjct: 467 FLVENAMVLEELHVDDTAQFFLD---QKVEKWRADSFQR--RNLPI 507
>Os08g0330900 Cyclin-like F-box domain containing protein
Length = 733
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 36/229 (15%)
Query: 300 VVQVEDLQGVVDSAPALATVHLESVFLAGTK-------EDGCCARLRFPAATALVLAKCR 352
V + LQ V+D+AP LA + L+ + L DG +LR PA T L L +
Sbjct: 202 TVSPDTLQRVIDAAPRLANLWLDGIILTSNDGSRRLYLADGFRLQLRGPALTELALIE-- 259
Query: 353 GHGSHHNGDDDASDCEGAMEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGP 412
+++ D +S A AP + P +SL SPA D ADLHF HD
Sbjct: 260 ----YYSRDAASSSTRPAC---AP-------SSFPGHYSLTSPAPDFASADLHF-HDHRS 304
Query: 413 HHYRDTTAVLRARFWRFLHNFRGVKSLKLKV----TYLKAIAVTGNGKGILLPPLHGVER 468
+ +D L W L + GV+ LKL++ Y+ A +G G++ +E
Sbjct: 305 YGDKDPNN-LTVPLWSCLRHLHGVRVLKLQLDFYAEYITMEADACDGGGVVPATFPNLEY 363
Query: 469 LDVAAL----HDPASETSTVAIANLLRCCPNLRDLVLRLSTVPPDSTKN 513
L++ A HD A+E + +A++LR CP +RDL LRLS + N
Sbjct: 364 LELDAHCKDDHDMATE---LTVASVLRWCPAIRDLRLRLSVADAEGRVN 409
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,339,818
Number of extensions: 851983
Number of successful extensions: 2151
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 2089
Number of HSP's successfully gapped: 12
Length of query: 653
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 546
Effective length of database: 11,448,903
Effective search space: 6251101038
Effective search space used: 6251101038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)