BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0520500 Os11g0520500|Os11g0520500
(831 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0520500 Conserved hypothetical protein 1046 0.0
Os01g0928100 Conserved hypothetical protein 370 e-102
Os05g0148500 Electron transport accessory protein domain co... 159 8e-39
>Os11g0520500 Conserved hypothetical protein
Length = 831
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/646 (82%), Positives = 533/646 (82%)
Query: 186 KPAAAVVEEDTXXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXAGDTGAIXXXXXXXX 245
KPAAAVVEEDT T AGDTGAI
Sbjct: 186 KPAAAVVEEDTALQLLARGRGGRSSSATRRVEEERPSSRRSGRERAGDTGAIKAVEPEKP 245
Query: 246 XXXXXXXXXGRWSRRERDDGGEEAAVSRKPLAAAPVVVDEEVTPLQLLXXXXXXXXXXXX 305
GRWSRRERDDGGEEAAVSRKPLAAAPVVVDEEVTPLQLL
Sbjct: 246 AAEVEAEVVGRWSRRERDDGGEEAAVSRKPLAAAPVVVDEEVTPLQLLARGARSSSAARR 305
Query: 306 XXXXXXXXXXXXXXXXXXXXXXXXGNGDAGVKXXXXXXXXXXXXXXXGRWSSRRSEDGSE 365
GNGDAGVK GRWSSRRSEDGSE
Sbjct: 306 VVQEEPQVVEAVAARPSSRRSRREGNGDAGVKAVVPDAAAEVEPEIAGRWSSRRSEDGSE 365
Query: 366 EAAAVLPKPLAAIVTGARSRSNSPAISNVNDDSFLLLVQAIGRNGVDTGAANRPPSTGRS 425
EAAAVLPKPLAAIVTGARSRSNSPAISNVNDDSFLLLVQAIGRNGVDTGAANRPPSTGRS
Sbjct: 366 EAAAVLPKPLAAIVTGARSRSNSPAISNVNDDSFLLLVQAIGRNGVDTGAANRPPSTGRS 425
Query: 426 TFAPPVGVNIRPLQAVEMPNGTPRERRAIYPDPTFAQXXXXXXXXXXXXITEELEMLKDE 485
TFAPPVGVNIRPLQAVEMPNGTPRERRAIYPDPTFAQ ITEELEMLKDE
Sbjct: 426 TFAPPVGVNIRPLQAVEMPNGTPRERRAIYPDPTFAQSTRSRDSHDSSTITEELEMLKDE 485
Query: 486 NVNLLEKLGLAEERFRQSEARTRELEKQQEIRKALISKNDKSEEIATLQKQLQSAREKEA 545
NVNLLEKLGLAEERFRQSEARTRELEKQQEIRKALISKNDKSEEIATLQKQLQSAREKEA
Sbjct: 486 NVNLLEKLGLAEERFRQSEARTRELEKQQEIRKALISKNDKSEEIATLQKQLQSAREKEA 545
Query: 546 AAVQKLQEAESETKYLRTMTHRMILSKEEMEEVVMKRCWLARYWGLAVQYGIYPDISMSK 605
AAVQKLQEAESETKYLRTMTHRMILSKEEMEEVVMKRCWLARYWGLAVQYGIYPDISMSK
Sbjct: 546 AAVQKLQEAESETKYLRTMTHRMILSKEEMEEVVMKRCWLARYWGLAVQYGIYPDISMSK 605
Query: 606 HEYWSSFAPLPFEYVTAAGQRAKDGSLRSGDDLEDTERFVHELTVTAGEGNIETMLSVDK 665
HEYWSSFAPLPFEYVTAAGQRAKDGSLRSGDDLEDTERFVHELTVTAGEGNIETMLSVDK
Sbjct: 606 HEYWSSFAPLPFEYVTAAGQRAKDGSLRSGDDLEDTERFVHELTVTAGEGNIETMLSVDK 665
Query: 666 GLQELAFLKVEDAVLIALAHHHRPNVAELVDPDIKSSGDEKFTEAFDLSKEEEEDVLFKQ 725
GLQELAFLKVEDAVLIALAHHHRPNVAELVDPDIKSSGDEKFTEAFDLSKEEEEDVLFKQ
Sbjct: 666 GLQELAFLKVEDAVLIALAHHHRPNVAELVDPDIKSSGDEKFTEAFDLSKEEEEDVLFKQ 725
Query: 726 AWLVYFWRRAKTHNVEDDIAEERLQMWIDRHGQQPTSHDAVDVDMGIRELRRLGIEQLLW 785
AWLVYFWRRAKTHNVEDDIAEERLQMWIDRHGQQPTSHDAVDVDMGIRELRRLGIEQLLW
Sbjct: 726 AWLVYFWRRAKTHNVEDDIAEERLQMWIDRHGQQPTSHDAVDVDMGIRELRRLGIEQLLW 785
Query: 786 ELSRREANSTKEEELNSTKEELKNTTTKDEMDTTNEESKGWGGGDD 831
ELSRREANSTKEEELNSTKEELKNTTTKDEMDTTNEESKGWGGGDD
Sbjct: 786 ELSRREANSTKEEELNSTKEELKNTTTKDEMDTTNEESKGWGGGDD 831
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 47/57 (82%)
Query: 46 VMLAHAGAAGEFSIILDAPLPSLHHYRRNPTPDXXXXXXXXXXDEVPARLRREGSGH 102
VMLAHAGAAGEFSIILDAPLPSLHHYRRNPTPD DEVPARLRREGSGH
Sbjct: 46 VMLAHAGAAGEFSIILDAPLPSLHHYRRNPTPDAAARRGGGGRDEVPARLRREGSGH 102
>Os01g0928100 Conserved hypothetical protein
Length = 570
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/427 (48%), Positives = 275/427 (64%), Gaps = 45/427 (10%)
Query: 405 AIGRNGVDTGAANRPPSTGR--------STFAPPVGVNIR-------PLQAVEMPNGTPR 449
A+GRN V+ R S GR +T PP+ + P AVE P R
Sbjct: 134 ALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPIKTSTTLRTPSPIPPVAVEPPVDRSR 193
Query: 450 ERRAIYPDPTFAQXXXXXXXXXXXXITEELEMLKDENVNLLEKLGLAEERFRQSEARTRE 509
++R D + +EL++L++EN ++LEKL LAEER ++EAR +E
Sbjct: 194 QKRF---DTGHLNSRESTPKREASALQDELDILQEENESVLEKLRLAEERCEEAEARAKE 250
Query: 510 LEKQ--------------------------QEIRKALISKNDKSEEIATLQKQLQSAREK 543
LEKQ ++ A SK+ K E+ TL+ +L A+E+
Sbjct: 251 LEKQVAALGEGVSLEARLLSRKEAALKQREAALKAARESKDGKDGEVTTLKHELDCAKEE 310
Query: 544 EAAAVQKLQEAESETKYLRTMTHRMILSKEEMEEVVMKRCWLARYWGLAVQYGIYPDISM 603
A+++L+EAE+ETK LR+MT RMIL++EEMEEVV+KRCWL+RYWGLAVQYG+YP+I++
Sbjct: 311 VVTAMEQLKEAETETKALRSMTQRMILTQEEMEEVVLKRCWLSRYWGLAVQYGVYPEIAV 370
Query: 604 SKHEYWSSFAPLPFEYVTAAGQRAKDGSLRSG-DDLEDTERFVHELTVTAGEGNIETMLS 662
SKHE+WSS APLP E V +AGQ+AK+ L+ G DD + + V +++ GEGNIE+MLS
Sbjct: 371 SKHEHWSSLAPLPLEVVLSAGQKAKEEPLKQGEDDAQRRNKLVRDMSDVMGEGNIESMLS 430
Query: 663 VDKGLQELAFLKVEDAVLIALAHHHRPNVAELVDPDIKSSGDEKFTEAFDLSKEEEEDVL 722
V+ GL+EL+ LKVEDAV++AL H RP++ D KS G+ KF EAFDLS EE EDV
Sbjct: 431 VEMGLRELSSLKVEDAVVVALGQHRRPSIVRQFTSDFKSPGEPKFLEAFDLSHEEAEDVS 490
Query: 723 FKQAWLVYFWRRAKTHNVEDDIAEERLQMWIDRHGQQPTSHDAVDVDMGIRELRRLGIEQ 782
FKQAWL+YFWRRAKTH +E+DIAEERLQ WI R+ PTSHDA+DV+ G+ ELR+LGIEQ
Sbjct: 491 FKQAWLIYFWRRAKTHGIEEDIAEERLQFWIGRNAVAPTSHDAIDVERGLTELRKLGIEQ 550
Query: 783 LLWELSR 789
LWE SR
Sbjct: 551 QLWEGSR 557
>Os05g0148500 Electron transport accessory protein domain containing protein
Length = 755
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 175/319 (54%), Gaps = 45/319 (14%)
Query: 475 ITEELEMLKDENVNLLEKLGLAEERFRQSEARTRELEK----QQEIRKALISKNDKS--- 527
+ +E+ L+ E + EK LAEER + +A++ + E LIS+ D +
Sbjct: 211 LHDEINSLQVETEGMYEKFNLAEERSEEGDAKSMHMAAVIADAIEPEANLISRKDAALQQ 270
Query: 528 -----------------EEIATLQKQLQSAREKEAAAVQKLQEAESETKYLRTMTHRMIL 570
+EIA L+ + + A + + Q+L+ S + L T+RM+L
Sbjct: 271 RKASLRSASRRSNSASCDEIAALRSEAKVANSVSSVS-QRLKSTGSIVRSLHGATNRMVL 329
Query: 571 SKEEMEEVVMKRCWLARYWGL--AVQYG---IYPDISMSKHEYWSSFAPLPFEYVTAAGQ 625
S+EEM R++ V+ G I+ DI+ K EYWSSFAPL E V + GQ
Sbjct: 330 SQEEM-----------RFYKYDAKVKKGSKSIHCDIAEEKQEYWSSFAPLSLEVVLSIGQ 378
Query: 626 RAKDGSLRSGDDLEDTERFVHELTVT--AGEGNIETMLSVDKGLQELAFLKVEDAVLIAL 683
+A+DG+L D+E + V +G+GNIE+ML V++GL+EL+ LK + L+
Sbjct: 379 KARDGALSDHADMETKSKMSDASHVNDMSGDGNIESMLLVERGLRELSSLKRTQSCLL-Y 437
Query: 684 AHHHRPNVAELVDPDIKSSGDEKFTEAFDLSKEEEEDVLFKQAWLVYFWRRAKTHNVEDD 743
+ +++++ P SS + E+ +LS+EE++DV FKQ+WL YFWRRAK+H++E+D
Sbjct: 438 QNIDASDLSQVASPKCPSSEGQNPPESLELSEEEQDDVRFKQSWLTYFWRRAKSHDIEED 497
Query: 744 IAEERLQMWIDRHGQQPTS 762
IA+ERLQ WI++ G P S
Sbjct: 498 IADERLQFWIEQ-GNHPVS 515
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,231,737
Number of extensions: 844757
Number of successful extensions: 3011
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2989
Number of HSP's successfully gapped: 4
Length of query: 831
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 722
Effective length of database: 11,344,475
Effective search space: 8190710950
Effective search space used: 8190710950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)