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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0148500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Electron transport accessory protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0305) R2 : 0.00259
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0698 (0.0642) R2dN8 : 0.00334 R2N8 : 0.00259
σ : 0.574
deviance : 151.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.56 0.557 2.98 -0.237 0.0457 0.752 0.554 -3.47 0.0797 7.4 0.1273 3000 -- --
148.41 0.567 2.94 -0.288 0.0461 0.317 0.547 -- 0.0688 6.9 0.5 3370 -- --
141.35 0.554 2.99 -0.234 0.0423 0.756 -- -3.38 0.0781 8.01 0.5 2980 -- --
148.87 0.568 2.94 -0.275 0.0418 0.303 -- -- 0.063 6.91 0.49 3370 -- --
141.5 0.554 2.99 -0.229 -- 0.747 -- -3.38 0.0782 -- 0.5 2980 -- --
149.19 0.573 2.94 -0.227 0.0962 -- 0.205 -- 0.0448 9.66 -- -- -- --
149.25 0.572 2.94 -0.218 0.101 -- -- -- 0.0463 11.3 -- -- -- --
148.96 0.568 2.94 -0.273 -- 0.306 -- -- 0.0661 -- 0.4935 3370 -- --
150.41 0.574 2.94 -- 0.101 -0.265 -- -- 0.069 11.4 0.49 3370 -- --
149.88 0.572 2.94 -0.22 -- -- -- -- 0.0453 -- -- -- -- --
150.49 0.574 2.93 -- 0.103 -- -- -- 0.0705 11.5 -- -- -- --
150.52 0.571 2.94 -- -- -0.183 -- -- 0.054 -- 0.6008 3475 -- --
151.16 0.574 2.94 -- -- -- -- -- 0.0698 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.43 radiation 10.0 90 < th dose dependent rect. 10 2
4 137.27 precipitation 0.1 1440 > th dose independent rect. 10 3
5 137.27 precipitation 0.1 1440 > th dose dependent rect. 10 3
6 137.36 precipitation 0.1 1440 > th dose independent rect. 12 1
8 137.36 precipitation 0.1 1440 > th dose dependent rect. 12 1
10 137.88 wind 1.0 1440 < th dose independent rect. 17 1
11 137.89 wind 1.0 1440 < th dose dependent rect. 17 1
12 138.01 radiation 10.0 90 < th dose independent rect. 10 2
13 138.11 wind 1.0 1440 > th dose independent rect. 17 1
16 138.49 radiation 10.0 4320 < th dose independent rect. 11 1
17 138.93 wind 1.0 30 < th dose independent rect. 11 1
19 139.61 radiation 10.0 4320 < th dose dependent rect. 10 2
20 139.72 temperature 20.0 720 < th dose independent rect. 9 1
24 140.65 wind 5.0 10 < th dose dependent rect. 11 1
25 140.72 wind 3.0 270 < th dose dependent rect. 8 1
26 140.73 wind 5.0 30 < th dose independent rect. 11 1
32 141.10 wind 9.0 14400 > th dose independent rect. 1 1
34 141.10 wind 9.0 14400 > th dose dependent rect. 1 1
43 141.45 wind 5.0 90 < th dose dependent rect. 11 1
64 142.38 wind 3.0 270 < th dose independent rect. 8 1
66 142.47 atmosphere 995.0 14400 > th dose independent rect. 6 6
75 142.81 wind 9.0 270 < th dose dependent rect. 23 13
78 142.88 atmosphere 1000.0 90 < th dose dependent rect. 10 1
90 143.02 wind 5.0 30 < th dose independent rect. 2 11
94 143.04 wind 9.0 90 > th dose dependent rect. 18 4
96 143.07 wind 9.0 30 > th dose independent rect. 21 5
117 143.07 wind 9.0 30 > th dose dependent rect. 21 5
151 143.11 wind 1.0 4320 < th dose dependent rect. 17 3
159 143.12 wind 7.0 30 > th dose independent rect. 21 1
165 143.12 wind 7.0 30 > th dose dependent rect. 21 1
194 143.23 wind 5.0 270 < th dose independent rect. 23 13
203 143.27 atmosphere 1010.0 30 < th dose independent rect. 11 1
208 143.29 precipitation 0.1 4320 < th dose independent rect. 12 1
209 143.29 precipitation 0.1 4320 < th dose dependent rect. 12 1
211 143.31 wind 5.0 30 < th dose independent rect. 11 4
239 143.37 wind 9.0 90 > th dose independent rect. 18 4
251 143.41 humidity 80.0 10 < th dose independent rect. 11 1
263 143.43 wind 1.0 10 > th dose independent rect. 12 23
307 143.53 wind 9.0 90 < th dose dependent rect. 1 11
310 143.54 wind 5.0 30 < th dose independent rect. 11 6
414 143.60 precipitation 0.1 4320 > th dose dependent rect. 8 6
431 143.66 precipitation 0.1 4320 > th dose independent rect. 8 6
442 143.68 precipitation 0.1 4320 > th dose independent rect. 6 18
444 143.69 precipitation 0.1 4320 < th dose independent rect. 8 6
445 143.69 precipitation 0.1 4320 < th dose dependent rect. 8 6
452 143.71 precipitation 0.1 4320 > th dose independent rect. 8 16
454 143.71 precipitation 0.1 4320 < th dose independent rect. 6 18
460 143.71 precipitation 0.1 4320 > th dose dependent rect. 6 18
461 143.71 precipitation 0.1 4320 < th dose dependent rect. 6 18
468 143.73 precipitation 0.1 4320 > th dose dependent rect. 8 16
481 143.74 precipitation 0.1 4320 > th dose dependent rect. 11 13
492 143.75 precipitation 0.1 4320 < th dose independent rect. 8 16
496 143.75 precipitation 0.1 4320 < th dose dependent rect. 8 16
500 143.76 precipitation 0.1 4320 > th dose independent rect. 11 13
506 143.76 wind 5.0 270 < th dose dependent rect. 8 4
572 143.80 wind 9.0 10 < th dose dependent rect. 2 11
577 143.81 precipitation 0.1 4320 < th dose independent rect. 11 13
586 143.81 precipitation 0.1 4320 < th dose dependent rect. 11 13
647 143.87 precipitation 0.1 4320 > th dose dependent rect. 15 9
650 143.88 wind 9.0 30 < th dose independent sin 11 NA
651 143.88 precipitation 0.1 4320 > th dose independent sin 21 NA
656 143.88 precipitation 0.1 4320 > th dose dependent sin 21 NA
692 143.91 precipitation 0.1 4320 < th dose independent sin 20 NA
695 143.91 precipitation 0.1 4320 < th dose dependent sin 20 NA
704 143.92 precipitation 0.1 4320 > th dose independent rect. 14 10
724 143.94 precipitation 0.1 4320 < th dose independent rect. 14 10
728 143.94 precipitation 0.1 4320 < th dose dependent rect. 14 10
731 143.95 radiation 30.0 10 < th dose independent rect. 11 1
750 143.97 precipitation 0.1 4320 > th dose dependent rect. 11 8
768 143.99 radiation 10.0 270 < th dose independent rect. 8 1
825 144.03 temperature 20.0 30 > th dose independent rect. 11 1
845 144.04 precipitation 0.1 4320 > th dose independent rect. 16 1
847 144.04 precipitation 0.1 4320 > th dose independent rect. 11 8
849 144.04 precipitation 0.1 4320 > th dose independent rect. 8 9
867 144.05 precipitation 0.1 4320 > th dose independent rect. 8 11
870 144.05 precipitation 0.1 4320 > th dose dependent rect. 16 1
871 144.05 wind 5.0 10 < th dose dependent rect. 11 4
879 144.06 precipitation 0.1 4320 < th dose independent rect. 16 1
884 144.06 precipitation 0.1 4320 < th dose dependent rect. 16 1
916 144.08 precipitation 0.1 4320 > th dose dependent rect. 15 4
986 144.11 precipitation 0.1 4320 < th dose independent rect. 11 8
995 144.11 precipitation 0.1 4320 < th dose dependent rect. 11 8