BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0148500 Os05g0148500|Os05g0148500
         (755 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0148500  Electron transport accessory protein domain co...   941   0.0  
Os01g0928100  Conserved hypothetical protein                      166   5e-41
Os11g0520500  Conserved hypothetical protein                      157   4e-38

>Os05g0148500 Electron transport accessory protein domain containing protein
          Length = 755

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/706 (69%), Positives = 490/706 (69%)

Query: 50  VHRHARTGSLXXXXXXSTVGXXXXXXXXXXXXXXXXXXXXXXSTXXXXXXXXXXXXXXXX 109
           VHRHARTGSL      STVG                      ST                
Sbjct: 50  VHRHARTGSLGGAGAASTVGRRGRAHNTAARAAAQRLARVMASTDGAGVGGGGGGVGGGG 109

Query: 110 XXXXXXXXXEYELSGPPIELSSTPRRTGTRXXXXXXXXXXXXXLTNRYTPGKSVPMIPSI 169
                    EYELSGPPIELSSTPRRTGTR             LTNRYTPGKSVPMIPSI
Sbjct: 110 DGGSGSDDDEYELSGPPIELSSTPRRTGTRSPSPSAPVSRPPSLTNRYTPGKSVPMIPSI 169

Query: 170 KQQNRPATSGPGSESPAINRREQRRSVDXXXXXXXXXXXXXXHDEINSLQVETEGMYEKF 229
           KQQNRPATSGPGSESPAINRREQRRSVD              HDEINSLQVETEGMYEKF
Sbjct: 170 KQQNRPATSGPGSESPAINRREQRRSVDLGSSLRARRTSSSLHDEINSLQVETEGMYEKF 229

Query: 230 NLAEERSEEGDAKSMHMAAVIADAIEPEANLISRKDAALQQRKXXXXXXXXXXXXXXCDE 289
           NLAEERSEEGDAKSMHMAAVIADAIEPEANLISRKDAALQQRK              CDE
Sbjct: 230 NLAEERSEEGDAKSMHMAAVIADAIEPEANLISRKDAALQQRKASLRSASRRSNSASCDE 289

Query: 290 IAALRSEAKVANSVSSVSQRLKSTGSIVRSLHGATNRMVLSQEEMRFYKYDAKVKKGSKS 349
           IAALRSEAKVANSVSSVSQRLKSTGSIVRSLHGATNRMVLSQEEMRFYKYDAKVKKGSKS
Sbjct: 290 IAALRSEAKVANSVSSVSQRLKSTGSIVRSLHGATNRMVLSQEEMRFYKYDAKVKKGSKS 349

Query: 350 IHCDIAEEKQEYWSSFAPLSLEVVLSIGQKARDGALSDHADMETKSKMSDASHVNDMSGD 409
           IHCDIAEEKQEYWSSFAPLSLEVVLSIGQKARDGALSDHADMETKSKMSDASHVNDMSGD
Sbjct: 350 IHCDIAEEKQEYWSSFAPLSLEVVLSIGQKARDGALSDHADMETKSKMSDASHVNDMSGD 409

Query: 410 GNIESMLLVERGLRELSSLKRTQSCLLYQNIDASDLSQVASPKCPSSEGQNXXXXXXXXX 469
           GNIESMLLVERGLRELSSLKRTQSCLLYQNIDASDLSQVASPKCPSSEGQN         
Sbjct: 410 GNIESMLLVERGLRELSSLKRTQSCLLYQNIDASDLSQVASPKCPSSEGQNPPESLELSE 469

Query: 470 XXQDDVRFKQSWLTYFWRRAKSHDIEEDIADERLQFWIEQGNHPVSTIDIIEALQIANCK 529
             QDDVRFKQSWLTYFWRRAKSHDIEEDIADERLQFWIEQGNHPVSTIDIIEALQIANCK
Sbjct: 470 EEQDDVRFKQSWLTYFWRRAKSHDIEEDIADERLQFWIEQGNHPVSTIDIIEALQIANCK 529

Query: 530 FAIHSPWVYAMSTDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 589
           FAIHSPWVYAMSTDQ                                             
Sbjct: 530 FAIHSPWVYAMSTDQPPAPPASARRRQCVAAAAAATAACLAPLAVLLAVLVLAPSLLPRL 589

Query: 590 XXXXXXXXXXXXSAELRLLXXXXXXXXXXYNLSATLRFDNPGGLYTWRCTALRAAPSYAG 649
                       SAELRLL          YNLSATLRFDNPGGLYTWRCTALRAAPSYAG
Sbjct: 590 LLRPHHVVPVVASAELRLLAFDAAAPAVAYNLSATLRFDNPGGLYTWRCTALRAAPSYAG 649

Query: 650 QRLGDAAALPGITXXXXXXXXXXXXXXXXTQRVPPGXXXXXXXXXXXXXXXXGWYVIKVD 709
           QRLGDAAALPGIT                TQRVPPG                GWYVIKVD
Sbjct: 650 QRLGDAAALPGITARGAGAGDARAAAWAGTQRVPPGRRARAVAAALARDRAAGWYVIKVD 709

Query: 710 VATVQNGAESDFACVLSFPXXXXXXXXXXXXVFDGGRCVDAVHGEI 755
           VATVQNGAESDFACVLSFP            VFDGGRCVDAVHGEI
Sbjct: 710 VATVQNGAESDFACVLSFPAAALARNGSGAAVFDGGRCVDAVHGEI 755



>Os01g0928100 Conserved hypothetical protein
          Length = 570

 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 189/366 (51%), Gaps = 30/366 (8%)

Query: 163 VPMIPSIKQQNRPATSGPGSESPAINRREQRRSVDX----XXXXXXXXXXXXXHDEINSL 218
           VP I +      P+   P +  P ++R  Q+R  D                   DE++ L
Sbjct: 165 VPPIKTSTTLRTPSPIPPVAVEPPVDRSRQKR-FDTGHLNSRESTPKREASALQDELDIL 223

Query: 219 QVETEGMYEKFNLAEERSEEGDAKSMHM---AAVIADAIEPEANLISRKDAALQQRKXXX 275
           Q E E + EK  LAEER EE +A++  +    A + + +  EA L+SRK+AAL+QR+   
Sbjct: 224 QEENESVLEKLRLAEERCEEAEARAKELEKQVAALGEGVSLEARLLSRKEAALKQREAAL 283

Query: 276 XXXXXXXXXXXCDEIAALRSEAKVANS-VSSVSQRLKSTGSIVRSLHGATNRMVLSQEEM 334
                        E+  L+ E   A   V +  ++LK   +  ++L   T RM+L+QEEM
Sbjct: 284 KAARESKDGKDG-EVTTLKHELDCAKEEVVTAMEQLKEAETETKALRSMTQRMILTQEEM 342

Query: 335 R--------FYKY-DAKVKKGSKSIHCDIAEEKQEYWSSFAPLSLEVVLSIGQKARDGAL 385
                      +Y    V+ G   ++ +IA  K E+WSS APL LEVVLS GQKA++  L
Sbjct: 343 EEVVLKRCWLSRYWGLAVQYG---VYPEIAVSKHEHWSSLAPLPLEVVLSAGQKAKEEPL 399

Query: 386 SD-HADMETKSKMSDASHVNDMSGDGNIESMLLVERGLRELSSLKRTQSCL--LYQNIDA 442
                D + ++K+     ++D+ G+GNIESML VE GLRELSSLK   + +  L Q+   
Sbjct: 400 KQGEDDAQRRNKL--VRDMSDVMGEGNIESMLSVEMGLRELSSLKVEDAVVVALGQHRRP 457

Query: 443 SDLSQVASP-KCPSSEGQNXXXXXXXXXXXQDDVRFKQSWLTYFWRRAKSHDIEEDIADE 501
           S + Q  S  K P                  +DV FKQ+WL YFWRRAK+H IEEDIA+E
Sbjct: 458 SIVRQFTSDFKSPGE--PKFLEAFDLSHEEAEDVSFKQAWLIYFWRRAKTHGIEEDIAEE 515

Query: 502 RLQFWI 507
           RLQFWI
Sbjct: 516 RLQFWI 521



>Os11g0520500 Conserved hypothetical protein
          Length = 831

 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 165/317 (52%), Gaps = 45/317 (14%)

Query: 213 DEINSLQVETEGMYEKFNLAEERSEEGDAKSMHMAAVIADAIEPEANLISRKDAALQQRK 272
           +E+  L+ E   + EK  LAEER  + +A++  +        E    LIS+ D       
Sbjct: 477 EELEMLKDENVNLLEKLGLAEERFRQSEARTRELE----KQQEIRKALISKND------- 525

Query: 273 XXXXXXXXXXXXXXCDEIAALRSEAKVANSVSSVS-QRLKSTGSIVRSLHGATNRMVLSQ 331
                          +EIA L+ + + A    + + Q+L+   S  + L   T+RM+LS+
Sbjct: 526 -------------KSEEIATLQKQLQSAREKEAAAVQKLQEAESETKYLRTMTHRMILSK 572

Query: 332 EEM-----------RFYKYDAKVKKGSKSIHCDIAEEKQEYWSSFAPLSLEVVLSIGQKA 380
           EEM           R++     V+ G   I+ DI+  K EYWSSFAPL  E V + GQ+A
Sbjct: 573 EEMEEVVMKRCWLARYWGL--AVQYG---IYPDISMSKHEYWSSFAPLPFEYVTAAGQRA 627

Query: 381 RDGALSDHADMETKSKMSDASHVNDMSGDGNIESMLLVERGLRELSSLKRTQSCLL-YQN 439
           +DG+L    D+E   +      +   +G+GNIE+ML V++GL+EL+ LK   + L+   +
Sbjct: 628 KDGSLRSGDDLEDTERF--VHELTVTAGEGNIETMLSVDKGLQELAFLKVEDAVLIALAH 685

Query: 440 IDASDLSQVASPKCPSSEGQNXXXXXXXXXXXQDDVRFKQSWLTYFWRRAKSHDIEEDIA 499
               +++++  P   SS  +            ++DV FKQ+WL YFWRRAK+H++E+DIA
Sbjct: 686 HHRPNVAELVDPDIKSSGDEKFTEAFDLSKEEEEDVLFKQAWLVYFWRRAKTHNVEDDIA 745

Query: 500 DERLQFWIEQ-GNHPVS 515
           +ERLQ WI++ G  P S
Sbjct: 746 EERLQMWIDRHGQQPTS 762



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,764,389
Number of extensions: 491866
Number of successful extensions: 1168
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 4
Length of query: 755
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 647
Effective length of database: 11,396,689
Effective search space: 7373657783
Effective search space used: 7373657783
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 160 (66.2 bits)