Os11g0520500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0520500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.41 | 0.466 | 9.96 | 1.21 | 1.02 | 1.44 | 0.7 | 0.717 | 0.608 | 21.3 | 0.74 | 1436 | -- | -- |
| 98.85 | 0.463 | 9.96 | 1.29 | 1.01 | 1.33 | 0.683 | -- | 0.6 | 21.2 | 0.73 | 1438 | -- | -- |
| 100.16 | 0.466 | 9.96 | 1.18 | 1.01 | 1.42 | -- | 0.716 | 0.606 | 21.3 | 0.7368 | 1438 | -- | -- |
| 100.57 | 0.467 | 9.96 | 1.26 | 1 | 1.31 | -- | -- | 0.605 | 21.2 | 0.76 | 1440 | -- | -- |
| 139.15 | 0.549 | 9.96 | 1.23 | -- | 1.75 | -- | 0.246 | 0.621 | -- | 1.106 | 1547 | -- | -- |
| 119.92 | 0.513 | 10 | 0.995 | 1.02 | -- | 0.591 | -- | 0.439 | 21.2 | -- | -- | -- | -- |
| 121.16 | 0.515 | 10 | 0.974 | 1.02 | -- | -- | -- | 0.439 | 21.2 | -- | -- | -- | -- |
| 139.01 | 0.549 | 9.93 | 1.27 | -- | 1.78 | -- | -- | 0.653 | -- | 1.09 | 1545 | -- | -- |
| 133.75 | 0.539 | 9.96 | -- | 0.969 | 0.919 | -- | -- | 0.603 | 20.8 | 4.367 | 1499 | -- | -- |
| 181.16 | 0.629 | 9.97 | 0.978 | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
| 146.16 | 0.566 | 10 | -- | 1.02 | -- | -- | -- | 0.33 | 21.3 | -- | -- | -- | -- |
| 162.14 | 0.595 | 9.98 | -- | -- | 0.63 | -- | -- | 0.386 | -- | 4.367 | 1499 | -- | -- |
| 206.38 | 0.671 | 9.99 | -- | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 2 | 92.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 6 | 93.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 7 | 93.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 15 | 93.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 18 | 93.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 20 | 93.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 84 | 94.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 96 | 94.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 102 | 94.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 103 | 94.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 104 | 94.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 125 | 94.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 192 | 94.73 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 194 | 94.78 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 199 | 94.88 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 253 | 95.79 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 276 | 96.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 382 | 96.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 383 | 96.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 385 | 96.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 401 | 96.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 438 | 97.15 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 480 | 97.50 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 482 | 97.52 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 503 | 97.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 511 | 97.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 516 | 97.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 538 | 97.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 552 | 97.85 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 641 | 98.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 842 | 98.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 843 | 98.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 853 | 98.86 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 870 | 98.90 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 892 | 99.05 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 897 | 99.10 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 903 | 99.12 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 907 | 99.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 921 | 99.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 922 | 99.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 937 | 99.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 948 | 99.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 15 |
| 954 | 99.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 958 | 99.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 961 | 99.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 21 |