BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0496400 Os11g0496400|AK107085
         (222 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0496400  Octicosapeptide/Phox/Bem1p domain containing p...   300   5e-82
Os01g0961200  CBS domain containing protein                       125   2e-29
Os12g0169400  CBS domain containing protein                       111   4e-25

>Os11g0496400 Octicosapeptide/Phox/Bem1p domain containing protein
          Length = 222

 Score =  300 bits (769), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 157/222 (70%), Positives = 157/222 (70%)

Query: 1   DVIDITHAAFSIVEGNGDGAVNDDAAISMVQRFWDSAMALGPLDDXXXXXXXXXXXXXXX 60
           DVIDITHAAFSIVEGNGDGAVNDDAAISMVQRFWDSAMALGPLDD               
Sbjct: 1   DVIDITHAAFSIVEGNGDGAVNDDAAISMVQRFWDSAMALGPLDDEIESQSQISEASRSQ 60

Query: 61  MMSDIHNEQSFSFKLQDRRGRMHRFSCEVQSLTPLITCILQRLGPDLDRDHLPQILYEDE 120
           MMSDIHNEQSFSFKLQDRRGRMHRFSCEVQSLTPLITCILQRLGPDLDRDHLPQILYEDE
Sbjct: 61  MMSDIHNEQSFSFKLQDRRGRMHRFSCEVQSLTPLITCILQRLGPDLDRDHLPQILYEDE 120

Query: 121 DRDKVVLASDDDLTAAVDHARLAGWKGLKLYLDYXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           DRDKVVLASDDDLTAAVDHARLAGWKGLKLYLDY                          
Sbjct: 121 DRDKVVLASDDDLTAAVDHARLAGWKGLKLYLDYSGSSGVRRKSVVPSVGVGGGGGGRSS 180

Query: 181 XXXTAVMDLSSRDXXXXXXXXXXXXXXXXXXXXXMAYLRRAS 222
              TAVMDLSSRD                     MAYLRRAS
Sbjct: 181 GGSTAVMDLSSRDAWAAAYSGVAAGAALVTGLGLMAYLRRAS 222



>Os01g0961200 CBS domain containing protein
          Length = 533

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 9/156 (5%)

Query: 1   DVIDITHAAFSIVEGNGDGAVNDDAAISMVQRFWDSAMALGPLDDXXXXXXXXXXXXXXX 60
           D + +THAA S+VEG  +    +  A +M+Q+FWDSA+AL P ++               
Sbjct: 334 DALQLTHAAISMVEGASEA---NSMANTMMQKFWDSALALQPAEESDARSEESRMATSDN 390

Query: 61  MMSD---IHNEQSFSFKLQDRRGRMHRFSCEVQSLTPLITCILQRLGPDLDRDHLPQILY 117
                   H   SFSFKLQDR+GRMHRFSC  +SL  L++ +  RLG + ++ +L   LY
Sbjct: 391 AEGKHIPPHVGNSFSFKLQDRKGRMHRFSCVSESLDELVSAVSYRLGMEKEKINL---LY 447

Query: 118 EDEDRDKVVLASDDDLTAAVDHARLAGWKGLKLYLD 153
           +D++ D+VVL +D DL+AA+ HAR AGWK L+L++D
Sbjct: 448 DDDEGDRVVLTTDGDLSAAIQHARSAGWKVLRLHMD 483



>Os12g0169400 CBS domain containing protein
          Length = 542

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 9/159 (5%)

Query: 1   DVIDITHAAFSIVEGNGDGAVNDDAAISMVQRFWDSAMALGPLD---DXXXXXXXXXXXX 57
           DV+ +THAA  +VEG G+  VND  A +++QRFWDS +AL   D   D            
Sbjct: 336 DVLQLTHAAIQLVEG-GNDTVND-VANTVMQRFWDSTLALESPDEECDSRSEVSLLLASE 393

Query: 58  XXXMMSDIHNE---QSFSFKLQDRRGRMHRFSCEVQSLTPLITCILQRLGPDLDRDHLPQ 114
                S I+      SF+FKLQD++GR+HRF+C  +SL  L + I QRL    D + + Q
Sbjct: 394 TGDGKSSIYPPVIGNSFAFKLQDQKGRVHRFTCGSESLNELASSIKQRLS-ITDEEGIMQ 452

Query: 115 ILYEDEDRDKVVLASDDDLTAAVDHARLAGWKGLKLYLD 153
           +LYED++ D+V+L +D DL  AV HA+ +G K LKL++D
Sbjct: 453 LLYEDDEGDRVLLTTDADLAGAVLHAKSSGLKVLKLHID 491



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,204,907
Number of extensions: 176477
Number of successful extensions: 435
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 3
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)