BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0492800 Os11g0492800|Os11g0492800
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0492800 Conserved hypothetical protein 182 4e-47
Os05g0370800 88 2e-18
Os01g0934800 Esterase/lipase/thioesterase domain containing... 82 1e-16
Os05g0370700 Alpha/beta hydrolase family protein 82 1e-16
Os01g0934700 Esterase/lipase/thioesterase domain containing... 81 2e-16
Os01g0934900 Esterase/lipase/thioesterase domain containing... 79 9e-16
>Os11g0492800 Conserved hypothetical protein
Length = 117
Score = 182 bits (463), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/102 (88%), Positives = 90/102 (88%)
Query: 16 VYQLSPPEDLALAMSTVRPSRRFLNDATMNGDVLTEXXXXXXXXXXXXAEEDEWKPAEIQ 75
VYQLSPPEDLALAMSTVRPSRRFLNDATMNGDVLTE AEEDEWKPAEIQ
Sbjct: 16 VYQLSPPEDLALAMSTVRPSRRFLNDATMNGDVLTEGRYGTVRRVYVVAEEDEWKPAEIQ 75
Query: 76 RLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIANKYS 117
RLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIANKYS
Sbjct: 76 RLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIANKYS 117
>Os05g0370800
Length = 289
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 16 VYQLSPPEDLALAMSTVRPSRRFLNDATM-NGDVLTEXXXXXXXXXXXXAEEDEWKPAEI 74
+YQLSPPE+L LA+S +RP+ RF DA M + +LT+ E+D P E
Sbjct: 189 LYQLSPPEELTLALSLIRPANRFTGDALMRDAGLLTKERYGSTRRVFVVVEDDHAIPVEF 248
Query: 75 QRLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIA 113
QR MV+ NPG EV + GADHM M SK +L++LL+ IA
Sbjct: 249 QRRMVAENPGVEVVDIAGADHMAMISKPAKLADLLVRIA 287
>Os01g0934800 Esterase/lipase/thioesterase domain containing protein
Length = 262
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 17 YQLSPPEDLALAMSTVRPSRRFLNDATMNGD-VLTEXXXXXXXXXXXXAEEDEWKPAEIQ 75
YQ SP EDLALA VRP +F++D M + +LT A+ D E+Q
Sbjct: 161 YQQSPAEDLALAKMLVRPGNQFMDDPVMKDESLLTNGNYGSVKKVYVIAKADSSSTEEMQ 220
Query: 76 RLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIANKY 116
R MV+ +PGT+V + GADH M SK REL ++L++IANKY
Sbjct: 221 RWMVAMSPGTDVEEIAGADHAVMNSKPRELCDILIKIANKY 261
>Os05g0370700 Alpha/beta hydrolase family protein
Length = 298
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 16 VYQLSPPEDLALAMSTVRPSRRFLNDATM-NGDVLTEXXXXXXXXXXXXAEEDEWKPAEI 74
+Y LSP EDL L +S +RP+ +F DA M + +LT+ E+D P E
Sbjct: 194 LYHLSPQEDLTLGLSLIRPTNKFTGDALMRDPGLLTKERYGSTRRVFVVVEDDRGIPVEF 253
Query: 75 QRLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIANK 115
QR M++ NPG EV GADHM M S +L+ELL+ IA+K
Sbjct: 254 QRRMIAENPGVEVVDFAGADHMAMISSPAKLAELLVRIADK 294
>Os01g0934700 Esterase/lipase/thioesterase domain containing protein
Length = 262
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 17 YQLSPPEDLALAMSTVRPSRRFLNDATMNGD-VLTEXXXXXXXXXXXXAEEDEWKPAEIQ 75
Y LSP EDL LA VRP+ +F++D TM D +LT A ED+ K E+
Sbjct: 163 YPLSPAEDLTLAKLLVRPTSQFVDDPTMKDDRLLTSANYGSVKRVCLMAMEDDLK--EVH 220
Query: 76 RLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIANKY 116
R M++ +PG EV + GADH M S+ RELS+LL +I +KY
Sbjct: 221 RYMITLSPGVEVEEIAGADHAVMCSRPRELSDLLAKIGSKY 261
>Os01g0934900 Esterase/lipase/thioesterase domain containing protein
Length = 325
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 16 VYQLSPPEDLALAMSTVRPSRRFLNDATMNGD-VLTEXXXXXXXXXXXXAEEDEWKPAEI 74
+Y SPPEDL LA VRP +++D M + +LTE A +D E+
Sbjct: 223 LYNRSPPEDLTLATMLVRPGTNYIDDPIMKDETLLTEGNYGSVKRVFLVAMDDASSDEEM 282
Query: 75 QRLMVSWNPGTEVRALQGADHMPMFSKARELSELLMEIANKY 116
QR + +PG EV L GADHM M SK REL +LL+ IA KY
Sbjct: 283 QRWTIDLSPGVEVEELAGADHMAMCSKPRELCDLLLRIAAKY 324
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,916,389
Number of extensions: 79877
Number of successful extensions: 143
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 6
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)