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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0370700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha/beta hydrolase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.71 (0.0481) R2 : 0.494
β1 : 1.4 (0.175) R2dD : 0.0765 R2D : 0.0712
β2 : 0.873 (0.165) R2dC : 0.0582 R2C : 0.194
β3 : 1.09 (0.12) R2dE : 0.183 R2E : 0.347
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.402 (0.105) R2dN8 : 0.0204 R2N8 : 0.023
σ : 0.891
deviance : 366.12
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_____
C
peak time of C : 3.76
E
wheather : temperature
threshold : 19.93
memory length : 72
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 14.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
337.62 0.863 3.69 1.75 0.829 1.09 0.99 1.83 0.453 3.52 19.96 75 18.3 14.4
349.87 0.871 3.7 1.56 0.86 1.04 2.34 -- 0.439 2.78 20 70 18.4 14.5
339.53 0.858 3.68 1.78 0.835 1.11 -- 2.2 0.462 3.92 20 73 18.3 14.5
366.12 0.891 3.71 1.4 0.873 1.09 -- -- 0.402 3.76 19.93 72 18.3 14.4
359.61 0.883 3.71 1.83 -- 1.5 -- 2.63 0.56 -- 19.3 75 18.4 14.7
401.94 0.94 3.67 1.63 1.88 -- 2.68 -- 0.61 2.65 -- -- -- --
426.32 0.967 3.67 1.57 1.9 -- -- -- 0.593 2.89 -- -- -- --
385.65 0.915 3.67 1.68 -- 1.54 -- -- 0.477 -- 19.22 102 18.7 13.8
417.97 0.952 3.71 -- 0.763 1.2 -- -- 0.316 3.72 19.7 78 18.3 14.4
634.56 1.18 3.67 1.65 -- -- -- -- 0.642 -- -- -- -- --
490.95 1.04 3.71 -- 1.93 -- -- -- 0.419 2.9 -- -- -- --
424.2 0.959 3.77 -- -- 1.63 -- -- 0.332 -- 19.3 121 18.6 13.7
706.11 1.24 3.71 -- -- -- -- -- 0.46 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.36 temperature 20.0 90 > th dose independent rect. 18 14
2 342.89 temperature 20.0 270 > th dose independent rect. 15 15
6 345.10 temperature 20.0 10 > th dose independent rect. 19 14
23 347.10 atmosphere 1005.0 30 > th dose independent rect. 22 6
36 348.68 atmosphere 1000.0 30 > th dose dependent rect. 20 8
37 348.78 atmosphere 1000.0 30 > th dose dependent rect. 22 6
41 349.06 humidity 80.0 270 > th dose independent rect. 1 6
43 349.50 temperature 20.0 90 < th dose independent rect. 7 21
48 349.84 atmosphere 1005.0 270 > th dose dependent rect. 22 4
50 349.89 atmosphere 1005.0 270 > th dose independent rect. 22 3
56 350.29 temperature 20.0 90 < th dose independent rect. 19 9
61 350.53 atmosphere 1005.0 270 > th dose independent rect. 20 6
68 350.95 atmosphere 1005.0 270 > th dose dependent rect. 23 2
76 351.25 atmosphere 1005.0 270 > th dose independent rect. 23 1
77 351.25 temperature 20.0 90 < th dose independent rect. 12 16
87 351.55 temperature 20.0 90 < th dose independent rect. 21 7
88 351.57 humidity 80.0 270 > th dose independent rect. 3 2
103 352.08 temperature 20.0 270 > th dose independent rect. 11 21
119 352.58 humidity 80.0 270 > th dose independent rect. 2 4
133 353.06 temperature 20.0 90 < th dose independent sin 12 NA
142 353.33 atmosphere 1005.0 30 > th dose independent rect. 20 8
148 353.74 humidity 50.0 90 > th dose dependent rect. 15 18
155 353.90 humidity 50.0 10 > th dose dependent rect. 15 18
158 354.15 temperature 20.0 270 < th dose independent rect. 22 4
169 354.50 temperature 20.0 30 > th dose independent rect. 3 23
184 354.99 temperature 20.0 90 > th dose independent rect. 3 20
188 355.12 temperature 20.0 90 > th dose independent sin 13 NA
193 355.27 temperature 20.0 720 > th dose independent rect. 18 6
205 355.53 temperature 20.0 270 < th dose dependent rect. 6 21
206 355.56 temperature 20.0 270 < th dose independent rect. 23 2
223 355.82 humidity 70.0 270 > th dose dependent rect. 1 6
224 355.82 temperature 10.0 270 > th dose dependent rect. 17 14
225 355.85 temperature 20.0 30 > th dose independent rect. 1 23
250 356.16 atmosphere 1000.0 30 > th dose dependent rect. 17 11
271 356.65 temperature 20.0 720 > th dose independent rect. 10 15
287 356.91 precipitation 0.1 270 < th dose independent rect. 5 22
288 356.91 precipitation 0.1 270 < th dose dependent rect. 5 22
300 357.05 temperature 15.0 270 > th dose dependent rect. 1 6
309 357.14 humidity 60.0 90 > th dose dependent rect. 3 6
313 357.16 temperature 30.0 30 < th dose dependent rect. 20 8
326 357.34 humidity 70.0 270 > th dose dependent rect. 3 2
333 357.45 atmosphere 1005.0 30 > th dose dependent rect. 12 16
343 357.59 temperature 20.0 720 < th dose dependent rect. 22 1
359 357.80 humidity 80.0 90 > th dose dependent rect. 3 18
371 357.94 temperature 20.0 270 < th dose dependent rect. 22 4
391 358.14 temperature 20.0 270 > th dose independent rect. 1 6
402 358.27 temperature 20.0 90 < th dose dependent rect. 17 11
427 358.51 atmosphere 995.0 30 > th dose dependent rect. 9 19
429 358.54 temperature 20.0 10 < th dose independent rect. 20 8
456 358.75 temperature 20.0 720 > th dose independent sin 17 NA
457 358.75 temperature 15.0 270 > th dose dependent rect. 3 2
467 358.77 temperature 20.0 90 < th dose independent rect. 18 15
486 358.89 temperature 20.0 90 > th dose independent rect. 23 23
530 359.06 temperature 20.0 90 > th dose independent rect. 3 6
537 359.09 temperature 20.0 270 > th dose independent rect. 1 20
539 359.10 atmosphere 1005.0 270 > th dose dependent rect. 9 18
602 359.43 temperature 20.0 90 < th dose independent rect. 17 22
616 359.47 temperature 20.0 90 < th dose independent rect. 21 23
633 359.52 temperature 20.0 90 < th dose independent no NA NA
687 359.75 temperature 30.0 270 < th dose dependent rect. 21 5
700 359.84 radiation 10.0 30 < th dose independent rect. 4 6
735 360.03 humidity 80.0 30 > th dose independent rect. 4 16
738 360.05 temperature 20.0 10 < th dose independent sin 11 NA
758 360.21 humidity 50.0 10 > th dose dependent rect. 18 15
761 360.22 humidity 90.0 270 < th dose dependent rect. 20 10
783 360.36 temperature 20.0 30 > th dose independent rect. 1 8
810 360.51 humidity 90.0 270 < th dose dependent rect. 21 8
835 360.62 temperature 20.0 90 < th dose independent rect. 21 12
847 360.67 atmosphere 1005.0 30 > th dose dependent rect. 14 14
879 360.83 humidity 80.0 270 > th dose dependent rect. 11 20
926 361.06 humidity 70.0 270 > th dose dependent sin 9 NA
933 361.10 humidity 80.0 90 > th dose dependent rect. 3 14
952 361.19 temperature 30.0 270 < th dose dependent rect. 22 3