Os11g0492800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0492800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.92	(0.0195)	R²	:	0.278
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	4.63	(0.352)	R²_dE	:	0.274	R²_E	:	0.275
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0458	(0.041)	R²_dN8	:	0.00256	R²_N8	:	0.00345
σ	:	0.366
deviance	:	61.77
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	998.2
memory length	:	42
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	8.39
open length of G	:	2.75

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
61.39	0.368	2.96	-0.342	0.0456	20.5	0.108	-92	-0.0553	12.3	998.1	44	8.47	2.83
61.4	0.368	2.92	-0.0895	0.0453	4.58	0.107	--	-0.0552	12.3	998.1	44	8.47	2.83
61.44	0.368	2.9	0.0204	0.0457	-1.64	--	36.3	-0.0546	12.8	998.1	44	8.46	2.81
61.44	0.365	2.92	-0.0849	0.0458	4.62	--	--	-0.0546	12.8	998.2	47	8.45	2.71
61.57	0.367	2.91	0.00778	--	-0.982	--	32.6	-0.0554	--	998.1	44	8.46	2.81
84.43	0.431	2.92	-0.0607	0.0879	--	0.232	--	-0.069	10.8	--	--	--	--
84.65	0.431	2.92	-0.051	0.0867	--	--	--	-0.068	11.2	--	--	--	--
61.57	0.365	2.92	-0.0867	--	4.64	--	--	-0.0554	--	998.2	42	8.45	2.77
61.63	0.366	2.92	--	0.0471	4.61	--	--	-0.0452	12.9	998.2	37	8.43	2.75
85.12	0.431	2.92	-0.0531	--	--	--	--	-0.0688	--	--	--	--	--
84.72	0.431	2.92	--	0.0873	--	--	--	-0.0623	11.3	--	--	--	--
61.77	0.366	2.92	--	--	4.63	--	--	-0.0458	--	998.2	42	8.39	2.75
85.19	0.431	2.92	--	--	--	--	--	-0.0629	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	64.24	atmosphere	1000	30	< th	dose dependent	rect.	9	1
16	68.24	atmosphere	1000	10	< th	dose independent	rect.	9	1
85	74.28	atmosphere	1000	90	< th	dose dependent	rect.	8	8
152	75.57	atmosphere	1000	720	< th	dose dependent	sin	5	NA
282	76.96	atmosphere	1000	10	< th	dose dependent	rect.	9	14
288	76.99	atmosphere	1000	270	< th	dose dependent	sin	2	NA
304	77.05	atmosphere	1000	90	< th	dose dependent	rect.	8	14
362	77.31	atmosphere	1000	90	< th	dose independent	rect.	8	8
409	77.50	atmosphere	1000	10	< th	dose dependent	rect.	9	17
411	77.51	atmosphere	1000	270	< th	dose dependent	rect.	5	17
436	77.57	atmosphere	1000	270	< th	dose dependent	rect.	5	14
446	77.62	atmosphere	1000	720	< th	dose independent	rect.	22	13
453	77.63	atmosphere	1000	720	< th	dose independent	rect.	22	15
460	77.66	atmosphere	1000	90	< th	dose dependent	rect.	8	18
526	77.91	atmosphere	1000	1440	< th	dose dependent	rect.	1	1
529	77.93	atmosphere	1000	10	< th	dose dependent	sin	1	NA
551	77.98	atmosphere	1000	10	< th	dose dependent	rect.	21	20
561	78.00	atmosphere	1000	90	< th	dose dependent	rect.	20	20
590	78.06	atmosphere	1000	10	< th	dose dependent	rect.	15	20
606	78.10	atmosphere	1000	720	< th	dose independent	sin	7	NA
650	78.19	atmosphere	1000	720	> th	dose independent	sin	7	NA
703	78.33	atmosphere	1000	270	< th	dose independent	rect.	5	20
726	78.37	atmosphere	1000	1440	> th	dose independent	rect.	24	2
754	78.41	atmosphere	1000	720	> th	dose independent	rect.	21	16
783	78.48	atmosphere	995	1440	> th	dose independent	rect.	13	2
794	78.50	atmosphere	1000	1440	< th	dose independent	rect.	1	1
796	78.50	atmosphere	995	1440	> th	dose independent	rect.	8	7
797	78.50	atmosphere	995	1440	> th	dose independent	rect.	6	9
805	78.51	atmosphere	1000	270	< th	dose independent	rect.	5	18
806	78.51	atmosphere	1000	90	< th	dose independent	rect.	8	18
808	78.52	atmosphere	995	1440	> th	dose independent	rect.	20	20
835	78.57	humidity	60	10	< th	dose independent	rect.	15	1
838	78.57	temperature	30	4320	> th	dose dependent	rect.	8	1
864	78.59	temperature	30	4320	> th	dose independent	rect.	8	1
883	78.60	atmosphere	995	1440	< th	dose independent	rect.	14	1
904	78.60	atmosphere	995	1440	> th	dose independent	rect.	4	11
928	78.60	atmosphere	995	1440	< th	dose dependent	rect.	14	1