BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0463700 Os11g0463700|AK065785
         (124 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0463700  Penicillin-binding protein, transpeptidase fol...   195   8e-51
Os01g0917300  Conserved hypothetical protein                       83   5e-17
Os12g0121000  Hypothetical protein                                 62   7e-11

>Os11g0463700 Penicillin-binding protein, transpeptidase fold domain containing
           protein
          Length = 124

 Score =  195 bits (495), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 32  HQPQGNDTAAAGEGWRPRLRKTYVEGGAAGMVPRRRRLVGRFQICAVCTCCGGPHGVCIP 91
           HQPQGNDTAAAGEGWRPRLRKTYVEGGAAGMVPRRRRLVGRFQICAVCTCCGGPHGVCIP
Sbjct: 32  HQPQGNDTAAAGEGWRPRLRKTYVEGGAAGMVPRRRRLVGRFQICAVCTCCGGPHGVCIP 91

Query: 92  APCCYAINCNIPNRPFGVCSFTPRTCNCLNCHL 124
           APCCYAINCNIPNRPFGVCSFTPRTCNCLNCHL
Sbjct: 92  APCCYAINCNIPNRPFGVCSFTPRTCNCLNCHL 124



>Os01g0917300 Conserved hypothetical protein
          Length = 125

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 61/98 (62%), Gaps = 10/98 (10%)

Query: 37  NDTAAAGEGWRPRLRKTYVEGG---AAGMVPRRRRLVGRFQICAVCTCCGGPHGV----- 88
           +    AGE          VEGG   +A ++   RR +G FQ+CA CTCCGG  G      
Sbjct: 28  SQVGGAGEEVEVARMVPVVEGGGGFSAMVLNETRRRLGSFQLCAPCTCCGGGGGGGGSRG 87

Query: 89  --CIPAPCCYAINCNIPNRPFGVCSFTPRTCNCLNCHL 124
             CI +PCCYAINCNIPNRPFG CSFTP++C+CL C+L
Sbjct: 88  GGCILSPCCYAINCNIPNRPFGFCSFTPKSCDCLGCNL 125



>Os12g0121000 Hypothetical protein
          Length = 128

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 35  QGNDTAAAGEGWRPRLRKTYVEGGA-AGMVPRRRRLVGRFQICAVCTCCGGPHGV-CIPA 92
           QG+D   A +   P  R  Y      A ++         F++C  C CC   +   C+  
Sbjct: 31  QGSDKKMAMKYDVPVKRLVYRPSAMQAAVIGTEAAAYEPFELCMGCRCCASSNASSCVDT 90

Query: 93  PCCYAINCNIPNRPFGVCSFTPRTCNC 119
            CCYAI+CNIP +PFGVC+F+P TC+C
Sbjct: 91  RCCYAIDCNIPGKPFGVCAFSPHTCDC 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.144    0.540 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,484,400
Number of extensions: 213541
Number of successful extensions: 710
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 4
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)