Os11g0463700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Penicillin-binding protein, transpeptidase fold domain containing protein.
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Os11g0463700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Penicillin-binding protein, transpeptidase fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.03 | 0.472 | 10.8 | -1.34 | 0.615 | 1.79 | -2.14 | -3.44 | -0.414 | 11.1 | 24.04 | 737 | -- | -- |
| 104.94 | 0.477 | 10.7 | -0.661 | 0.603 | 1.47 | -1.7 | -- | -0.222 | 11.6 | 23.87 | 746 | -- | -- |
| 117.26 | 0.504 | 10.8 | -0.967 | 0.645 | 1.56 | -- | -0.936 | -0.303 | 12.3 | 23.96 | 789 | -- | -- |
| 116.88 | 0.504 | 10.7 | -0.786 | 0.647 | 1.41 | -- | -- | -0.181 | 13 | 25.23 | 881 | -- | -- |
| 132.65 | 0.536 | 10.8 | -0.868 | -- | 1.41 | -- | -0.996 | -0.302 | -- | 22.4 | 402 | -- | -- |
| 157.31 | 0.588 | 10.7 | -0.386 | 0.432 | -- | -1.7 | -- | -0.0707 | 13.5 | -- | -- | -- | -- |
| 164.07 | 0.6 | 10.7 | -0.437 | 0.543 | -- | -- | -- | -0.0751 | 15.8 | -- | -- | -- | -- |
| 133.85 | 0.539 | 10.8 | -0.727 | -- | 1.29 | -- | -- | -0.285 | -- | 22.37 | 440 | -- | -- |
| 131.79 | 0.535 | 10.7 | -- | 0.58 | 1.22 | -- | -- | -0.0828 | 13.1 | 25.26 | 844 | -- | -- |
| 180.35 | 0.628 | 10.7 | -0.459 | -- | -- | -- | -- | -0.0896 | -- | -- | -- | -- | -- |
| 169.1 | 0.608 | 10.7 | -- | 0.551 | -- | -- | -- | -0.0265 | 15.7 | -- | -- | -- | -- |
| 146.92 | 0.565 | 10.7 | -- | -- | 1.16 | -- | -- | -0.059 | -- | 25.8 | 557 | -- | -- |
| 185.91 | 0.636 | 10.7 | -- | -- | -- | -- | -- | -0.0386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.50 | temperature | 25 | 720 | > th | dose dependent | sin | 20 | NA |
| 2 | 100.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 6 | 100.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 25 | 101.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 113 | 102.01 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 123 | 102.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 157 | 103.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 307 | 106.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 387 | 107.83 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 16 |
| 517 | 109.60 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 9 |
| 540 | 109.90 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 639 | 110.78 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 7 |
| 701 | 111.28 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 749 | 111.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 794 | 112.03 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 9 |
| 798 | 112.05 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 812 | 112.13 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 855 | 112.47 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 22 |
| 879 | 112.62 | temperature | 30 | 720 | < th | dose independent | sin | 19 | NA |
| 909 | 112.82 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 932 | 112.97 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 16 |
| 933 | 112.97 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 17 |
| 938 | 113.02 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 985 | 113.26 | temperature | 25 | 270 | > th | dose independent | sin | 19 | NA |