BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0463700 Os11g0463700|AK065785
         (124 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65295.1  | chr1:24251567-24252054 FORWARD LENGTH=116          102   4e-23
AT5G01015.1  | chr5:5335-5769 REVERSE LENGTH=105                   64   2e-11

>AT1G65295.1 | chr1:24251567-24252054 FORWARD LENGTH=116
          Length = 115

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 61/90 (67%), Gaps = 2/90 (2%)

Query: 35  QGNDTAAAGEGWRPRLRKTYVEGGAAGMVPRRRRLVGRFQICAVCTCCGGPHGVCIPAPC 94
           Q N+   A EG    +     E     M   RR+L G FQIC+VCTCCGG  G+C+P+PC
Sbjct: 28  QANEVLPA-EGDNEMMMVPLGEEKFMVMNETRRKL-GSFQICSVCTCCGGAKGLCLPSPC 85

Query: 95  CYAINCNIPNRPFGVCSFTPRTCNCLNCHL 124
           CYAINCNIPNRPFG CSFTP+TCNC  CH+
Sbjct: 86  CYAINCNIPNRPFGYCSFTPKTCNCFGCHI 115



>AT5G01015.1 | chr5:5335-5769 REVERSE LENGTH=105
          Length = 104

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 35  QGNDTAAAGEGWRPRLRKTYVEGGAAGMVPRRRRLVGRFQICAVCTCCGGPHGVCIPAPC 94
           QG+ T    E   P      VE G    V  RR+L+   ++C  C CC      C   PC
Sbjct: 24  QGDGTGLNAEEMWP------VEVGMEYRV-WRRKLMTPLELCLECKCCSST--TCATMPC 74

Query: 95  CYAINCNIPNRPFGVCSFTPRTCNCLNCHL 124
           C+ INC +PN+PFGVC+F P++C+C +C +
Sbjct: 75  CFGINCQLPNKPFGVCAFVPKSCHCNSCSI 104



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.144    0.540 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,517,462
Number of extensions: 103764
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 38
Effective length of database: 8,748,793
Effective search space: 332454134
Effective search space used: 332454134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)