BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0454800 Os11g0454800|J090004G24
(89 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0454800 Conserved hypothetical protein 187 2e-48
Os01g0549200 Conserved hypothetical protein 93 4e-20
Os10g0181700 ATP-binding region, ATPase-like domain contain... 73 5e-14
Os02g0469300 ATP-binding region, ATPase-like domain contain... 67 3e-12
>Os11g0454800 Conserved hypothetical protein
Length = 89
Score = 187 bits (474), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 TSKLINFHSTTFKLFLPNIFLSCLKQNDLFQPFHRVLSSASSKGRGVAGVLEADFIKPTH 60
TSKLINFHSTTFKLFLPNIFLSCLKQNDLFQPFHRVLSSASSKGRGVAGVLEADFIKPTH
Sbjct: 1 TSKLINFHSTTFKLFLPNIFLSCLKQNDLFQPFHRVLSSASSKGRGVAGVLEADFIKPTH 60
Query: 61 DKQDFEKSQLYQKLINRLKEMTNEYWYNC 89
DKQDFEKSQLYQKLINRLKEMTNEYWYNC
Sbjct: 61 DKQDFEKSQLYQKLINRLKEMTNEYWYNC 89
>Os01g0549200 Conserved hypothetical protein
Length = 188
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 51/64 (79%)
Query: 26 QNDLFQPFHRVLSSASSKGRGVAGVLEADFIKPTHDKQDFEKSQLYQKLINRLKEMTNEY 85
+N L PF +V +++ KGRGV G+LEA+FIKPTHDKQDFEKS LYQ+L +RLKEMT EY
Sbjct: 109 KNRLIAPFWKVANNSYGKGRGVVGILEANFIKPTHDKQDFEKSVLYQRLESRLKEMTYEY 168
Query: 86 WYNC 89
W C
Sbjct: 169 WQVC 172
>Os10g0181700 ATP-binding region, ATPase-like domain containing protein
Length = 609
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 21 LSCLKQNDLFQPFHRVLSSASSKGRGVAGVLEADFIKPTHDKQDFEKSQLYQKLINRLKE 80
++ +N L PF +VL SS+GR V GVLEA+FI+P HDKQDFE++ L+ +L +L++
Sbjct: 374 MNVYHKNRLIMPFWKVLQEGSSRGRSVVGVLEANFIEPAHDKQDFERTPLFIRLEAKLRQ 433
Query: 81 MTNEYW 86
+ +YW
Sbjct: 434 IILDYW 439
>Os02g0469300 ATP-binding region, ATPase-like domain containing protein
Length = 803
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 26 QNDLFQPFHRVLSSASSKGRGVAGVLEADFIKPTHDKQDFEKSQLYQKLINRLKEMTNEY 85
+N L +PF RV + +GRGV GVLE +F++P HDKQDFE++ +L RL M +Y
Sbjct: 462 KNRLIKPFWRVWALPGIQGRGVIGVLEVNFVEPAHDKQDFERTNSLARLEARLNLMQKKY 521
Query: 86 WY-NC 89
W NC
Sbjct: 522 WSDNC 526
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,678,376
Number of extensions: 85734
Number of successful extensions: 228
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 4
Length of query: 89
Length of database: 17,035,801
Length adjustment: 59
Effective length of query: 30
Effective length of database: 13,955,175
Effective search space: 418655250
Effective search space used: 418655250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)