Os01g0549200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0549200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.61 | 0.192 | 8.83 | -0.227 | 0.338 | 0.892 | -0.62 | 1.84 | -0.0249 | 7.63 | 0.17 | 1408 | -- | -- |
| 18.63 | 0.201 | 8.81 | -0.0461 | 0.248 | 0.556 | -0.535 | -- | 0.0505 | 8.19 | 0.1703 | 1338 | -- | -- |
| 17.57 | 0.195 | 8.84 | -0.256 | 0.348 | 0.884 | -- | 1.88 | -0.0253 | 7.99 | 0.1475 | 1426 | -- | -- |
| 18.32 | 0.199 | 8.8 | -0.116 | 0.305 | 0.422 | -- | -- | 0.024 | 7.59 | 1.64 | 2753 | -- | -- |
| 20.04 | 0.208 | 8.82 | -0.111 | -- | 0.641 | -- | -0.0531 | -0.0415 | -- | 1.533 | 3819 | -- | -- |
| 19.89 | 0.209 | 8.81 | -0.191 | 0.383 | -- | -0.437 | -- | -0.0458 | 8.13 | -- | -- | -- | -- |
| 20.45 | 0.212 | 8.81 | -0.203 | 0.382 | -- | -- | -- | -0.0451 | 8.31 | -- | -- | -- | -- |
| 19.66 | 0.207 | 8.82 | -0.109 | -- | 0.654 | -- | -- | 0.021 | -- | 2.028 | 3839 | -- | -- |
| 18.65 | 0.201 | 8.79 | -- | 0.302 | 0.458 | -- | -- | 0.027 | 7.64 | 1.35 | 2757 | -- | -- |
| 28.56 | 0.25 | 8.82 | -0.201 | -- | -- | -- | -- | -0.041 | -- | -- | -- | -- | -- |
| 21.54 | 0.217 | 8.8 | -- | 0.381 | -- | -- | -- | -0.0225 | 8.35 | -- | -- | -- | -- |
| 18.81 | 0.202 | 8.79 | -- | -- | 0.775 | -- | -- | 0.0465 | -- | 0.5763 | 2430 | -- | -- |
| 29.62 | 0.254 | 8.81 | -- | -- | -- | -- | -- | -0.0187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 2 | 15.99 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 10 | 16.04 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 15 | 16.07 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 27 | 16.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 48 | 16.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 55 | 16.22 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 61 | 16.23 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 83 | 16.27 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 84 | 16.27 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 101 | 16.32 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 107 | 16.33 | humidity | 90.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 113 | 16.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 182 | 16.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 188 | 16.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 194 | 16.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 195 | 16.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 207 | 16.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 214 | 16.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 225 | 16.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 231 | 16.43 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 259 | 16.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 270 | 16.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 290 | 16.46 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 292 | 16.46 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 351 | 16.49 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 377 | 16.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 417 | 16.52 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 480 | 16.55 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 491 | 16.56 | wind | 3.0 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 504 | 16.56 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 22 |
| 511 | 16.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 522 | 16.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 534 | 16.58 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 540 | 16.58 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 550 | 16.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 563 | 16.59 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 624 | 16.61 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 627 | 16.62 | humidity | 90.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 629 | 16.62 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 638 | 16.62 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 648 | 16.63 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 650 | 16.63 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 652 | 16.63 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 654 | 16.63 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 696 | 16.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 697 | 16.65 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 704 | 16.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 734 | 16.66 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 785 | 16.67 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 811 | 16.68 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 832 | 16.68 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 853 | 16.69 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 881 | 16.69 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 951 | 16.71 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 953 | 16.71 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 993 | 16.71 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 994 | 16.71 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 23 |