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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0454800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0259) R2 : 0.267
β1 : -0.293 (0.0945) R2dD : 0.0165 R2D : -0.0249
β2 : -- (--) R2dC : -- R2C : --
β3 : 14.7 (1.2) R2dE : 3.08 R2E : -2.92
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -50.3 (4.05) R2dD*E : 3.15 R2D*E : -2.81
γ1 : -0.0815 (0.0546) R2dN8 : 0.00511 R2N8 : -0.00578
σ : 0.478
deviance : 105.2
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.6701
memory length : 271
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.25
open length of G : 0.783

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.11 0.489 2.9 -0.402 0.108 14 -0.7 -48.2 -0.0549 18.2 0.8907 277 0.0331 1.01
140.72 0.552 2.84 -0.167 0.0529 0.149 -0.42 -- -0.0909 19.4 3.774 255 1.72 0.0328
107.63 0.483 2.91 -0.328 0.0597 14.4 -- -48.7 -0.089 17.4 0.8103 262 0.0329 1.02
140.62 0.552 2.85 -0.144 0.0542 0.135 -- -- -0.0995 19 3.385 231 1.57 0.011
105.2 0.478 2.9 -0.293 -- 14.7 -- -50.3 -0.0815 -- 0.6701 271 0.25 0.783
141.02 0.557 2.85 -0.16 0.0593 -- -0.439 -- -0.122 22.1 -- -- -- --
141.62 0.557 2.85 -0.144 0.0783 -- -- -- -0.123 0.956 -- -- -- --
138.05 0.547 2.82 -0.0674 -- 0.849 -- -- -0.0382 -- 1.044 264 1.58 0.0166
138.95 0.549 2.84 -- 0.00322 0.574 -- -- -0.0547 6.06 1.056 237 1.57 0.0113
142.01 0.557 2.85 -0.142 -- -- -- -- -0.121 -- -- -- -- --
142.17 0.558 2.85 -- 0.076 -- -- -- -0.107 0.875 -- -- -- --
137.15 0.545 2.84 -- -- 1.12 -- -- -0.0842 -- 1.064 154 1.58 0.0166
142.53 0.557 2.85 -- -- -- -- -- -0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.86 wind 1.0 270 < th dose dependent rect. 24 1
2 117.38 precipitation 0.1 10 > th dose independent rect. 3 1
6 117.38 precipitation 0.1 10 > th dose dependent rect. 3 1
10 117.41 wind 1.0 10 < th dose dependent rect. 3 1
11 117.51 wind 1.0 10 < th dose independent rect. 4 1
15 118.22 atmosphere 1005.0 90 < th dose dependent rect. 1 3
17 118.72 radiation 1.0 1440 > th dose independent rect. 9 5
19 118.92 radiation 1.0 1440 < th dose independent rect. 9 4
21 118.92 radiation 1.0 1440 < th dose dependent rect. 9 4
23 118.96 atmosphere 1005.0 10 < th dose dependent rect. 1 4
31 119.14 radiation 1.0 1440 < th dose independent rect. 13 1
32 119.14 radiation 1.0 1440 < th dose dependent rect. 13 1
77 121.94 atmosphere 1005.0 270 < th dose independent rect. 24 1
90 122.59 atmosphere 1005.0 270 < th dose dependent rect. 24 1
100 123.08 radiation 1.0 90 < th dose independent rect. 12 3
101 123.08 radiation 1.0 90 < th dose dependent rect. 12 3
112 123.56 wind 1.0 270 < th dose independent rect. 24 1
123 123.92 radiation 1.0 1440 > th dose independent rect. 9 1
125 124.08 radiation 1.0 1440 > th dose independent rect. 4 1
135 124.08 radiation 1.0 1440 > th dose dependent rect. 4 1
158 124.92 humidity 90.0 270 > th dose dependent rect. 24 1
160 124.94 wind 1.0 10 < th dose independent rect. 3 6
162 125.02 radiation 1.0 10 < th dose independent rect. 13 1
173 125.02 radiation 1.0 10 < th dose dependent rect. 13 1
195 125.42 atmosphere 1005.0 10 < th dose dependent rect. 4 1
199 125.53 humidity 80.0 90 > th dose dependent rect. 12 1
200 125.57 humidity 80.0 90 > th dose independent rect. 12 1
219 126.22 wind 1.0 10 < th dose dependent rect. 3 6
254 126.58 atmosphere 1005.0 10 < th dose dependent rect. 19 1
261 126.70 humidity 60.0 14400 < th dose independent rect. 6 1
263 126.70 humidity 60.0 14400 < th dose independent rect. 20 1
265 126.70 radiation 20.0 14400 > th dose independent rect. 17 1
317 126.70 humidity 60.0 14400 < th dose dependent rect. 6 1
319 126.70 humidity 60.0 14400 < th dose dependent rect. 20 1
321 126.70 radiation 20.0 14400 > th dose dependent rect. 17 1
388 126.95 humidity 90.0 90 > th dose dependent rect. 24 4
397 127.28 humidity 60.0 14400 > th dose independent rect. 7 1
398 127.36 precipitation 0.1 10 > th dose independent rect. 3 5
460 127.70 radiation 1.0 1440 < th dose dependent rect. 15 1
465 127.73 radiation 10.0 1440 < th dose dependent rect. 22 7
533 128.35 humidity 80.0 1440 > th dose independent rect. 12 1
544 128.47 radiation 10.0 1440 < th dose independent rect. 22 7
555 128.80 humidity 80.0 1440 < th dose independent rect. 12 1
567 129.01 atmosphere 1005.0 10 < th dose independent rect. 1 4
569 129.01 humidity 60.0 14400 > th dose independent rect. 21 11
594 129.22 humidity 80.0 1440 > th dose dependent rect. 12 1
606 129.30 atmosphere 1005.0 30 < th dose dependent rect. 19 10
608 129.31 wind 1.0 10 < th dose independent rect. 3 10
641 129.39 radiation 10.0 1440 < th dose dependent rect. 19 10
659 129.56 temperature 20.0 10 > th dose independent rect. 3 1
663 129.59 precipitation 0.1 270 > th dose independent rect. 2 1
664 129.59 precipitation 0.1 270 > th dose dependent rect. 2 1
667 129.61 wind 1.0 1440 < th dose independent rect. 5 2
679 129.68 radiation 10.0 1440 < th dose dependent rect. 3 2
680 129.69 wind 1.0 1440 > th dose independent rect. 5 2
684 129.72 humidity 80.0 10 > th dose independent rect. 14 1
688 129.73 humidity 60.0 14400 > th dose independent rect. 2 6
722 130.00 radiation 10.0 1440 < th dose independent rect. 19 10
741 130.13 atmosphere 1005.0 10 < th dose independent rect. 19 10
748 130.18 wind 1.0 10 < th dose independent rect. 3 13
750 130.18 wind 1.0 10 < th dose dependent rect. 3 13
772 130.26 radiation 10.0 720 < th dose dependent rect. 10 18
774 130.28 radiation 10.0 1440 < th dose independent rect. 3 2
852 130.71 humidity 80.0 1440 < th dose independent rect. 8 6
862 130.76 humidity 90.0 270 > th dose independent rect. 24 1
877 130.83 humidity 90.0 90 > th dose independent rect. 1 3
929 131.12 wind 7.0 4320 > th dose independent rect. 18 1
932 131.13 radiation 10.0 1440 < th dose dependent rect. 9 14
951 131.17 radiation 10.0 1440 < th dose dependent rect. 11 12
964 131.19 radiation 1.0 90 < th dose independent rect. 12 16
965 131.19 radiation 1.0 90 < th dose independent rect. 7 21