BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0424400 Os11g0424400|AK071783
         (325 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0424400  Conserved hypothetical protein                      536   e-153
Os10g0488800  Myosin head, motor region domain containing pr...    81   1e-15
Os07g0562800  Myosin heavy chain class VIII A1 protein             68   9e-12

>Os11g0424400 Conserved hypothetical protein
          Length = 325

 Score =  536 bits (1381), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/297 (90%), Positives = 269/297 (90%)

Query: 13  MEVMLDALMQRGVGXXXXXXXXXXXXXLPTRPTVXXXXXXXXXXXXXXXWVHRSPSLPPM 72
           MEVMLDALMQRGVG             LPTRPTV               WVHRSPSLPPM
Sbjct: 13  MEVMLDALMQRGVGKPEEKPKEEAPPALPTRPTVRGRPPSLQRPGSPPPWVHRSPSLPPM 72

Query: 73  LEVDEKLAVNSVLERRATVAEEAVKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMK 132
           LEVDEKLAVNSVLERRATVAEEAVKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMK
Sbjct: 73  LEVDEKLAVNSVLERRATVAEEAVKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMK 132

Query: 133 SVEEELRKQITTMQIAQNNAGRTGESTTRTHHRQELSGTSGAPAQSSGWREEEASVTRQQ 192
           SVEEELRKQITTMQIAQNNAGRTGESTTRTHHRQELSGTSGAPAQSSGWREEEASVTRQQ
Sbjct: 133 SVEEELRKQITTMQIAQNNAGRTGESTTRTHHRQELSGTSGAPAQSSGWREEEASVTRQQ 192

Query: 193 ARGRESNVAAVVDERKTDAVSRLATELRQESEAFEHRARAVTEAGPPTAKSVDELKKLKR 252
           ARGRESNVAAVVDERKTDAVSRLATELRQESEAFEHRARAVTEAGPPTAKSVDELKKLKR
Sbjct: 193 ARGRESNVAAVVDERKTDAVSRLATELRQESEAFEHRARAVTEAGPPTAKSVDELKKLKR 252

Query: 253 QFGTWKKEYGARLRKTKAELKKLVRSERGGHGNRRRCCSWKIKLPKCRFPKCCAFKL 309
           QFGTWKKEYGARLRKTKAELKKLVRSERGGHGNRRRCCSWKIKLPKCRFPKCCAFKL
Sbjct: 253 QFGTWKKEYGARLRKTKAELKKLVRSERGGHGNRRRCCSWKIKLPKCRFPKCCAFKL 309



>Os10g0488800 Myosin head, motor region domain containing protein
          Length = 950

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 33/208 (15%)

Query: 85  LERRATVAEEAVKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMKSVEEELRKQITT 144
           L+RR   AE  V       R+KDEE   L+Q+++ YE+R SE E +MK++EE  +KQ+ +
Sbjct: 748 LQRRILKAEATV-------REKDEENEMLQQRLQQYENRWSEYEQKMKAMEEMWQKQMRS 800

Query: 145 MQIAQNNAGRT--GESTTRTHHRQELSGTSGAPA-QSSGWREEEASVTRQQARGRESNVA 201
           +Q + + A ++   + T R      +S +S   + +S+G     AS    +  GRE N +
Sbjct: 801 LQSSLSVAKKSLALDETPR------MSDSSVDQSWESNGVHIGSASQLVPRTVGREMNAS 854

Query: 202 AVVDERKTDAVSRLATELRQESEAFEHRARAVTEAGPPTAK-SVD---ELKKLKRQFGTW 257
             V       +SRLA E  Q S+ F   A+ + E     A  S++   EL++LK+ F +W
Sbjct: 855 ISV-------ISRLAEEFEQRSQVFADDAKFLVEVKSGQADASLNPDMELRRLKQNFDSW 907

Query: 258 KKEYGARLRKTKAELKKLVRSERGGHGN 285
           KK++G+R+R+TK  L KL      G GN
Sbjct: 908 KKDFGSRIRETKVILNKL------GSGN 929



>Os07g0562800 Myosin heavy chain class VIII A1 protein
          Length = 1219

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 32/184 (17%)

Query: 96   VKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMKSVEEELRKQITTMQIAQNNAGRT 155
            V + +  +R K+EE   L+QQ++ YE + SE  A                    + A RT
Sbjct: 1048 VSKAEAALRDKEEENEMLKQQLDQYEKKWSEYVA--------------------SRAART 1087

Query: 156  GESTTRTHHRQELSGTSGAPAQSSGWREEEASVTRQQARGRESNVAAVVDERKTDAVSRL 215
              +    H+  E +        S+G    E +  + Q    E+ VAA   +R+ +AV+ L
Sbjct: 1088 DAAPMHAHYDSEDT--------STGTHTPEGTEFKYQNHNSEARVAAPNSDRRINAVNHL 1139

Query: 216  ATELRQESEAFEHRARAVTEAGPPTAKSV----DELKKLKRQFGTWKKEYGARLRKTKAE 271
            A E     + FE  A  +         S     DEL+KLK +F TWKK+Y +RL++TK  
Sbjct: 1140 AKEFEDRRQVFEDDAGFLVAVKSGQVGSNMNPDDELRKLKDRFATWKKDYKSRLKETKVN 1199

Query: 272  LKKL 275
            L+K+
Sbjct: 1200 LQKV 1203



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,031,724
Number of extensions: 340880
Number of successful extensions: 2509
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2502
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)