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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0424400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0276) R2 : 0.426
β1 : 0.527 (0.101) R2dD : 0.037 R2D : -0.000825
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.88 (0.126) R2dE : 0.422 R2E : -0.134
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.1 (0.555) R2dD*E : 0.492 R2D*E : 0.0297
γ1 : 0.183 (0.0598) R2dN8 : 0.0173 R2N8 : -0.0141
σ : 0.503
deviance : 116.78
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.684
memory length : 4320
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 4.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.23 0.507 3.05 0.513 0.0498 -1.85 -0.613 -9.04 0.177 6.19 6.638 4322 18.4 4.02
174.57 0.615 3.01 0.517 0.0508 -0.8 -0.369 -- 0.208 5.56 6.668 4324 18.4 2.63
116.57 0.503 3.05 0.524 0.0734 -1.86 -- -9.01 0.178 6.31 6.686 4319 18.4 4.2
156.17 0.582 3.03 0.481 0.0256 -1.05 -- -- 0.117 5.78 7.792 4319 18.5 2.57
116.78 0.503 3.05 0.527 -- -1.88 -- -9.1 0.183 -- 6.684 4320 18.4 4.2
199.44 0.662 2.99 0.31 0.143 -- -0.0368 -- 0.107 10.1 -- -- -- --
199.44 0.661 2.99 0.309 0.143 -- -- -- 0.108 10.3 -- -- -- --
151.43 0.573 3.04 0.47 -- -1.18 -- -- 0.124 -- 7.778 4319 18.6 2.48
150.75 0.572 3.03 -- 0.0564 -1.1 -- -- 0.115 12.6 7.797 4319 18.6 2.45
200.68 0.662 2.99 0.307 -- -- -- -- 0.107 -- -- -- -- --
201.96 0.665 3 -- 0.141 -- -- -- 0.0731 10.1 -- -- -- --
149.54 0.57 3.04 -- -- -1.17 -- -- 0.125 -- 7.791 4318 18.8 2.3
203.16 0.665 3 -- -- -- -- -- 0.0731 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.65 wind 7 4320 < th dose independent rect. 18 4
2 120.73 wind 5 4320 > th dose dependent rect. 19 3
9 121.23 wind 7 4320 < th dose independent rect. 18 9
17 122.31 wind 7 4320 > th dose independent rect. 18 4
27 123.37 wind 7 4320 > th dose independent rect. 18 9
29 123.55 wind 7 4320 > th dose dependent rect. 18 10
36 124.21 wind 9 4320 > th dose dependent rect. 20 8
64 125.12 wind 9 4320 > th dose dependent rect. 20 6
155 129.47 atmosphere 995 14400 > th dose independent rect. 17 2
158 129.68 atmosphere 995 14400 < th dose independent rect. 18 1
161 129.68 atmosphere 995 14400 < th dose dependent rect. 18 1
190 130.14 humidity 90 1440 < th dose dependent rect. 3 1
207 132.11 atmosphere 995 14400 > th dose independent rect. 13 6
211 132.15 atmosphere 995 14400 > th dose independent rect. 13 8
243 132.34 atmosphere 995 14400 > th dose independent rect. 8 11
249 132.42 atmosphere 995 14400 > th dose independent rect. 11 8
413 137.06 temperature 20 720 < th dose independent rect. 18 2
462 138.03 temperature 20 720 < th dose independent rect. 10 10
479 138.31 temperature 20 1440 > th dose independent rect. 18 1
485 138.43 humidity 90 1440 < th dose dependent rect. 24 7
487 138.46 humidity 90 1440 < th dose dependent rect. 2 4
494 138.56 atmosphere 995 14400 < th dose independent sin 22 NA
510 138.64 atmosphere 995 14400 > th dose independent sin 22 NA
515 138.71 wind 7 1440 > th dose independent rect. 8 1
527 138.85 wind 7 1440 < th dose independent rect. 8 1
548 139.07 atmosphere 995 14400 < th dose dependent sin 22 NA
564 139.27 atmosphere 995 14400 > th dose independent rect. 20 20
592 139.50 atmosphere 995 14400 > th dose independent sin 3 NA
619 139.67 radiation 1 14400 < th dose dependent rect. 19 7
629 139.71 humidity 90 1440 < th dose dependent rect. 24 4
634 139.73 atmosphere 995 14400 < th dose independent sin 3 NA
695 140.06 radiation 1 14400 < th dose dependent rect. 19 9
723 140.24 radiation 1 14400 < th dose dependent rect. 23 3
857 140.55 atmosphere 995 14400 > th dose independent no NA NA
864 140.55 atmosphere 995 14400 > th dose independent rect. 10 23
865 140.55 atmosphere 995 14400 > th dose independent rect. 12 23
866 140.55 atmosphere 995 14400 > th dose independent rect. 14 23
884 140.57 wind 5 4320 > th dose dependent rect. 17 17
915 140.67 radiation 1 14400 < th dose dependent rect. 23 5
994 140.83 atmosphere 1005 14400 > th dose independent rect. 6 1
995 140.83 atmosphere 995 14400 > th dose independent rect. 14 19
998 140.84 atmosphere 995 14400 < th dose independent no NA NA