BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0424400 Os11g0424400|AK071783
(325 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50360.1 | chr1:18650688-18657106 FORWARD LENGTH=1154 83 2e-16
AT3G19960.2 | chr3:6949787-6956736 FORWARD LENGTH=1177 82 3e-16
AT5G54280.2 | chr5:22039606-22045592 REVERSE LENGTH=1221 80 1e-15
AT4G27370.1 | chr4:13694881-13700780 REVERSE LENGTH=1135 61 9e-10
>AT1G50360.1 | chr1:18650688-18657106 FORWARD LENGTH=1154
Length = 1153
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 22/223 (9%)
Query: 74 EVDEKLAVNSVLERRATVAEEAVKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMKS 133
EV K + S L+RR E A+ R+K+EE LRQ+V+ Y++R SE E +MKS
Sbjct: 941 EVLVKASYLSDLQRRVLRTEAAL-------REKEEENDILRQRVQQYDNRWSEYETKMKS 993
Query: 134 VEEELRKQITTMQIAQNNAGRTGESTTRTHHRQELSGTSGAPAQSSGWREEEASVTRQQA 193
+EE +KQ+ ++Q + + A ++ E + S A SG Q
Sbjct: 994 MEEIWQKQMKSLQSSLSIAKKSLEVEDSARNSDASVNASDATDLDSGGSH------YQMG 1047
Query: 194 RGRESNVAAVVDERKTDAVSRLATELRQESEAFEHRARAVTE--AGPPTAK-SVD-ELKK 249
GR +V + +SRLA E Q ++ F + + E +G A + D EL++
Sbjct: 1048 HGRSRSVGVGLS-----VISRLAEEFGQRAQVFGDDRKFLMEVKSGQVEANLNPDRELRR 1102
Query: 250 LKRQFGTWKKEYGARLRKTKAELKKLVRSERGGHGNRRRCCSW 292
LK+ F TWKK+YG RLR+TK L KL E GG + + W
Sbjct: 1103 LKQMFETWKKDYGGRLRETKLILSKLGSEETGGSAEKVKMNWW 1145
>AT3G19960.2 | chr3:6949787-6956736 FORWARD LENGTH=1177
Length = 1176
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 21/215 (9%)
Query: 74 EVDEKLAVNSVLERRATVAEEAVKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMKS 133
EV K +V S L+RR AE A+ R+K+EE L+Q+++ YE+R SE E +MKS
Sbjct: 959 EVLVKASVLSELQRRVLKAEAAL-------REKEEENDILQQRLQQYENRWSEYETKMKS 1011
Query: 134 VEEELRKQITTMQIAQNNAGRT--GESTTRTHHRQELSGTSGAPAQSSGWREEEASVTRQ 191
+EE +KQ+ ++Q + + A ++ E + R S S + ++ W Q
Sbjct: 1012 MEEIWQKQMRSLQSSLSIAKKSLAVEDSARN------SDASVNASDATDWDSSSNQFRSQ 1065
Query: 192 QARGRESNVAAVVDERKTDAVSRLATELRQESEAFEHRARAVTEAGPPTAK-SVD---EL 247
+ G S + + + RLA E Q ++ F A+ + E + ++D EL
Sbjct: 1066 TSNGVGSRLQPM--SAGLSVIGRLAEEFEQRAQVFGDDAKFLVEVKSGQVEANLDPDREL 1123
Query: 248 KKLKRQFGTWKKEYGARLRKTKAELKKLVRSERGG 282
++LK+ F TWKK+YG RLR+TK L KL E G
Sbjct: 1124 RRLKQMFETWKKDYGGRLRETKLILSKLGSEESSG 1158
>AT5G54280.2 | chr5:22039606-22045592 REVERSE LENGTH=1221
Length = 1220
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 38/207 (18%)
Query: 103 VRQKDEEIAALRQQVEHYESRLSECEARMKSVEEELRKQITTMQ--------------IA 148
+ QK+EE ALR+Q+ +E R SE + +MKS+EE +KQ++++Q I
Sbjct: 1018 LSQKEEENTALREQLRQFEERWSEYDIKMKSMEETWQKQMSSLQMSLAAARKSLAAESIT 1077
Query: 149 QNNAGRTGESTTRTHHRQELSGTSGAPAQSSGWREEEASVTR---QQARGRESNVAAVVD 205
GR S + + E + ++G P G R T + R RE N +
Sbjct: 1078 GQAGGRQDTSISPFGYDSEDTMSTGTP----GVRTPTNKFTNGNTPELRIRELNGS---- 1129
Query: 206 ERKTDAVSRLATELRQESEAFEHRARAVTEA--GP---PTAKSV----DELKKLKRQFGT 256
+AV+ LA E Q F+ ARA+ E GP P + DE ++LK +F T
Sbjct: 1130 ---LNAVNHLAREFDQRRLNFDEDARAIVEVKLGPQATPNGQQQQHPEDEFRRLKLRFET 1186
Query: 257 WKKEYGARLRKTKAELKKLVRSERGGH 283
WKK+Y ARLR TKA L + V ++G H
Sbjct: 1187 WKKDYKARLRDTKARLHR-VDGDKGRH 1212
>AT4G27370.1 | chr4:13694881-13700780 REVERSE LENGTH=1135
Length = 1134
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 37/205 (18%)
Query: 85 LERRATVAEEAVKQKDDVVRQKDEEIAALRQQVEHYESRLSECEARMKSVEEELRKQITT 144
L+ R E A+ QK+D E AL+++++ +E R E E RMKS+E+ +K +++
Sbjct: 956 LQSRVLKVEAAIMQKED-------ENTALQEELQRFEERWLENETRMKSMEDTWQKHMSS 1008
Query: 145 MQIAQNNAGRTGESTTRTHHRQELSGTSGAPAQSSGWREEEASVTRQQARGRESNVAAVV 204
MQ++ A + H GT S G ++ +G S+
Sbjct: 1009 MQMSLAAACKVLAPDKTASH-----GTDSEDTMSFG-------TPTKELKGSLSD----- 1051
Query: 205 DERKTDAVSRLATELRQESEAFEHRARAVTEAGPPTAKS----VDELKKLKRQFGTWKKE 260
V+ L+TE Q S +++ E + + +EL++LK +F WKK+
Sbjct: 1052 -------VNNLSTEFDQRSVIIHEDPKSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKD 1104
Query: 261 YGARLRKTKAELKKLVRSERGGHGN 285
Y RLR+TKA ++ + + G H N
Sbjct: 1105 YKTRLRETKARVR--LNGDEGRHRN 1127
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.126 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,460,306
Number of extensions: 205165
Number of successful extensions: 1693
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1702
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)