BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0308100 Os11g0308100|AK099990
         (87 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0308100  Similar to Transposase of Tn10 [Oryza sativa (...   181   9e-47
Os01g0252100  Similar to Glycogen synthase kinase-3 homolog ...   122   7e-29
Os05g0134000  Similar to Shaggy-related protein kinase eta (...    68   2e-12

>Os11g0308100 Similar to Transposase of Tn10 [Oryza sativa (japonica
          cultivar-group)]
          Length = 87

 Score =  181 bits (460), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MASIGAALSGLKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTNINGKGAETGHIIVTTTG 60
          MASIGAALSGLKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTNINGKGAETGHIIVTTTG
Sbjct: 1  MASIGAALSGLKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTNINGKGAETGHIIVTTTG 60

Query: 61 GRNGQPKLTKCKSAWEDMLNTEHAVTF 87
          GRNGQPKLTKCKSAWEDMLNTEHAVTF
Sbjct: 61 GRNGQPKLTKCKSAWEDMLNTEHAVTF 87



>Os01g0252100 Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-)
          Length = 408

 Score =  122 bits (305), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/69 (82%), Positives = 60/69 (86%)

Query: 1  MASIGAALSGLKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTNINGKGAETGHIIVTTTG 60
          M S+G A SGLKNSS T+MGAEKLPDQMHDLKIRDD EV+ T INGKG ETGHIIVTTTG
Sbjct: 1  MGSVGVAPSGLKNSSSTSMGAEKLPDQMHDLKIRDDKEVEATIINGKGTETGHIIVTTTG 60

Query: 61 GRNGQPKLT 69
          GRNGQPK T
Sbjct: 61 GRNGQPKQT 69



>Os05g0134000 Similar to Shaggy-related protein kinase eta (EC 2.7.1.-)
          (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2)
          (ULTRACURVATA1)
          Length = 411

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 1  MASIGAALS--GLKNSSFTTMGAEKLPDQMHDLKIRDDN-EVQVTNINGKGAETGHIIVT 57
          MAS+G   S  G +N + T+  A++LP++M ++ IRDDN ++    +NG G E GH+IVT
Sbjct: 1  MASVGVVRSSLGFQNETSTSGDADRLPNEMSNMSIRDDNKDIDDIVVNGNGTEPGHVIVT 60

Query: 58 TTGGRNGQPKLT 69
          +  GRNGQ K T
Sbjct: 61 SIDGRNGQAKQT 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,035,133
Number of extensions: 110328
Number of successful extensions: 170
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 3
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)