Os01g0252100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-).
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Os01g0252100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.38 | 0.207 | 13.2 | -0.0183 | 0.324 | -0.948 | -0.0584 | -0.0177 | 0.112 | 13.7 | 19.39 | 263 | -- | -- |
| 19.38 | 0.205 | 13.2 | -0.0146 | 0.324 | -0.95 | -0.0621 | -- | 0.113 | 13.7 | 19.37 | 262 | -- | -- |
| 19.39 | 0.205 | 13.2 | -0.0255 | 0.33 | -0.95 | -- | -0.0505 | 0.11 | 13.7 | 19.39 | 251 | -- | -- |
| 19.39 | 0.205 | 13.2 | -0.0154 | 0.328 | -0.955 | -- | -- | 0.113 | 13.7 | 19.4 | 257 | -- | -- |
| 21.03 | 0.214 | 13.2 | 0.0181 | -- | -0.85 | -- | 0.0596 | 0.118 | -- | 18.84 | 693 | -- | -- |
| 34.17 | 0.274 | 13.2 | -0.233 | 0.254 | -- | -0.192 | -- | -0.0511 | 8.84 | -- | -- | -- | -- |
| 34.29 | 0.274 | 13.2 | -0.239 | 0.255 | -- | -- | -- | -0.0513 | 8.77 | -- | -- | -- | -- |
| 20.99 | 0.213 | 13.2 | -0.00437 | -- | -0.857 | -- | -- | 0.103 | -- | 18.78 | 702 | -- | -- |
| 19.4 | 0.205 | 13.2 | -- | 0.33 | -0.961 | -- | -- | 0.116 | 13.8 | 19.37 | 257 | -- | -- |
| 37.97 | 0.288 | 13.2 | -0.239 | -- | -- | -- | -- | -0.0493 | -- | -- | -- | -- | -- |
| 35.81 | 0.28 | 13.2 | -- | 0.254 | -- | -- | -- | -0.0246 | 8.85 | -- | -- | -- | -- |
| 20.99 | 0.213 | 13.2 | -- | -- | -0.858 | -- | -- | 0.104 | -- | 18.76 | 702 | -- | -- |
| 39.48 | 0.293 | 13.2 | -- | -- | -- | -- | -- | -0.0228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 5 | 19.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 7 | 19.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 16 | 19.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 17 | 19.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 19 | 19.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 20 | 19.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 19.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 28 | 19.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 38 | 19.44 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 46 | 19.52 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 55 | 19.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 87 | 19.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 112 | 19.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 116 | 19.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 155 | 20.09 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 180 | 20.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 344 | 20.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 353 | 20.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 392 | 20.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 502 | 20.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 710 | 21.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 767 | 21.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 920 | 21.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 994 | 21.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |