Os11g0308100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase of Tn10 [Oryza sativa (japonica cultivar-group)].
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Os11g0308100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase of Tn10 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.93 | 0.293 | 11.1 | -1.17 | 0.358 | -1.66 | -0.3 | 0.469 | 0.2 | 0.19 | 24.48 | 256 | -- | -- |
| 39.1 | 0.291 | 11.1 | -1.11 | 0.384 | -1.73 | -0.243 | -- | 0.216 | 23.9 | 24.23 | 223 | -- | -- |
| 39.27 | 0.292 | 11.1 | -1.14 | 0.371 | -1.7 | -- | 0.282 | 0.215 | 0.193 | 24.33 | 242 | -- | -- |
| 39.33 | 0.292 | 11.1 | -1.09 | 0.388 | -1.73 | -- | -- | 0.225 | 0.0744 | 24.23 | 223 | -- | -- |
| 43.62 | 0.308 | 11.1 | -1.24 | -- | -1.54 | -- | 0.958 | 0.172 | -- | 24.93 | 499 | -- | -- |
| 80.72 | 0.421 | 11 | -0.67 | 0.273 | -- | -0.358 | -- | 0.529 | 21.8 | -- | -- | -- | -- |
| 81.2 | 0.422 | 11 | -0.657 | 0.273 | -- | -- | -- | 0.53 | 22 | -- | -- | -- | -- |
| 44.67 | 0.311 | 11.1 | -1.07 | -- | -1.65 | -- | -- | 0.21 | -- | 24.56 | 461 | -- | -- |
| 67.33 | 0.384 | 11 | -- | 0.448 | -1.26 | -- | -- | 0.422 | 23.2 | 24.23 | 223 | -- | -- |
| 85.7 | 0.433 | 11 | -0.653 | -- | -- | -- | -- | 0.53 | -- | -- | -- | -- | -- |
| 92.56 | 0.45 | 11 | -- | 0.271 | -- | -- | -- | 0.603 | 21.8 | -- | -- | -- | -- |
| 72.08 | 0.395 | 11 | -- | -- | -1.22 | -- | -- | 0.4 | -- | 24.76 | 429 | -- | -- |
| 96.96 | 0.46 | 11 | -- | -- | -- | -- | -- | 0.602 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 4 | 39.11 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 7 | 39.24 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 39.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 11 | 39.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 39.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 71 | 41.25 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 78 | 41.29 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 84 | 41.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 103 | 41.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 168 | 42.06 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 226 | 42.37 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 231 | 42.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 253 | 42.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 380 | 42.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 401 | 42.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 418 | 42.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 438 | 43.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 567 | 43.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 592 | 43.39 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 713 | 43.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 973 | 44.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |