BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0308100 Os11g0308100|AK099990
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26751.1  | chr5:9399582-9401839 REVERSE LENGTH=406             84   2e-17
AT3G05840.2  | chr3:1740793-1742927 FORWARD LENGTH=410             79   5e-16
AT5G14640.1  | chr5:4719350-4721772 REVERSE LENGTH=411             75   7e-15
AT4G00720.1  | chr4:294116-297002 REVERSE LENGTH=473               57   1e-09
AT1G57870.3  | chr1:21431138-21434877 REVERSE LENGTH=444           47   1e-06

>AT5G26751.1 | chr5:9399582-9401839 REVERSE LENGTH=406
          Length = 405

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 5/70 (7%)

Query: 1  MASIGAALS-GLKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTNINGKGAETGHIIVTTT 59
          MAS+G A + G ++S+    G +KLP++M+D+KIRDD E++ T ++G G ETGHIIVTT 
Sbjct: 1  MASVGIAPNPGARDST----GVDKLPEEMNDMKIRDDKEMEATVVDGNGTETGHIIVTTI 56

Query: 60 GGRNGQPKLT 69
          GGRNGQPK T
Sbjct: 57 GGRNGQPKQT 66



>AT3G05840.2 | chr3:1740793-1742927 FORWARD LENGTH=410
          Length = 409

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 1  MASIGAALSG-LKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTNINGKGAETGHIIVTTT 59
          MAS+G   S  ++ S+     A++LP++M D+KI+DD E++ T +NG   ETGHIIVTT 
Sbjct: 1  MASVGIEPSAAVRESTGNVTDADRLPEEMKDMKIQDDKEMEATIVNGNVTETGHIIVTTI 60

Query: 60 GGRNGQPKLT 69
          GGRNGQPK T
Sbjct: 61 GGRNGQPKQT 70



>AT5G14640.1 | chr5:4719350-4721772 REVERSE LENGTH=411
          Length = 410

 Score = 75.1 bits (183), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 1  MASIGA--ALSGLKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTNINGKGAETGHIIVTT 58
          MAS+G   A S     S  ++ AEKLP+ ++++KI+DD E++   ++G G ETGHIIVTT
Sbjct: 1  MASVGTLPASSMATKQSNASICAEKLPEGINEMKIKDDKEMEAAVVDGNGTETGHIIVTT 60

Query: 59 TGGRNGQPKLT 69
           GG+NGQPK T
Sbjct: 61 IGGKNGQPKQT 71



>AT4G00720.1 | chr4:294116-297002 REVERSE LENGTH=473
          Length = 472

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 7/55 (12%)

Query: 22  EKLPDQMHDLKIRD-------DNEVQVTNINGKGAETGHIIVTTTGGRNGQPKLT 69
           ++LPD M ++KIRD       D +++ T +NG G ETG +I TT GGR+G+PK T
Sbjct: 81  DQLPDVMIEMKIRDERNANREDKDMETTVVNGSGTETGQVITTTVGGRDGKPKQT 135



>AT1G57870.3 | chr1:21431138-21434877 REVERSE LENGTH=444
          Length = 443

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 4  IGAALSGLKNSSFTTMGAEKLPDQMHDLKIRDDNEVQVTN------INGKGAETGHIIVT 57
          +G++ S  KN+  T+   + L   M ++KIRD  E           I+G GAE GH+I T
Sbjct: 9  VGSSRSA-KNTKNTSSSVDWLSRDMLEMKIRDKTEADEERDSEPDIIDGVGAEPGHVITT 67

Query: 58 TTGGRNGQPKLT 69
          T  GRNGQ + T
Sbjct: 68 TLPGRNGQSRQT 79



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,902,297
Number of extensions: 67995
Number of successful extensions: 120
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 5
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)