BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0302700 Os11g0302700|AK073931
         (430 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0302700  RecA bacterial DNA recombination family protein     781   0.0  
Os01g0901200  Similar to RecA protein (Fragment)                  456   e-128
Os03g0639700  Similar to DNA repair protein recA, chloroplas...   240   2e-63

>Os11g0302700 RecA bacterial DNA recombination family protein
          Length = 430

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/406 (94%), Positives = 382/406 (94%)

Query: 25  TSSVLESCNRNVSPRVQLWRFSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFG 84
           TSSVLESCNRNVSPRVQLWRFSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFG
Sbjct: 25  TSSVLESCNRNVSPRVQLWRFSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFG 84

Query: 85  EESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIA 144
           EESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIA
Sbjct: 85  EESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIA 144

Query: 145 EAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIXXX 204
           EAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSI   
Sbjct: 145 EAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIDVV 204

Query: 205 XXXXXXXXXPKTELDGEMGDAHVALQARLMSQAXXXXXXXXXXXXTMLVFINQVRSKLST 264
                    PKTELDGEMGDAHVALQARLMSQA            TMLVFINQVRSKLST
Sbjct: 205 VVDSVAALVPKTELDGEMGDAHVALQARLMSQALRKLSHSLSRSRTMLVFINQVRSKLST 264

Query: 265 FSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSEEVVGTQIQVKIVKNKHAPPFKTV 324
           FSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSEEVVGTQIQVKIVKNKHAPPFKTV
Sbjct: 265 FSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSEEVVGTQIQVKIVKNKHAPPFKTV 324

Query: 325 HLELEFGKGLSRELEIIEVGFKHKFITKSGVFYHLNGQNFHGKDALKCYLAENKNVLESL 384
           HLELEFGKGLSRELEIIEVGFKHKFITKSGVFYHLNGQNFHGKDALKCYLAENKNVLESL
Sbjct: 325 HLELEFGKGLSRELEIIEVGFKHKFITKSGVFYHLNGQNFHGKDALKCYLAENKNVLESL 384

Query: 385 MSMIKESIMQQESHPDRNMEDANPDTSITEEFVSATDEQVPEEVEA 430
           MSMIKESIMQQESHPDRNMEDANPDTSITEEFVSATDEQVPEEVEA
Sbjct: 385 MSMIKESIMQQESHPDRNMEDANPDTSITEEFVSATDEQVPEEVEA 430



>Os01g0901200 Similar to RecA protein (Fragment)
          Length = 429

 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/370 (61%), Positives = 280/370 (75%), Gaps = 4/370 (1%)

Query: 62  EANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPK 121
           E N+ KKD AL QA+DQI SAFG+ +IMWL  S G +EVPV+STGSF+LD+ALG GGLPK
Sbjct: 59  EENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPK 118

Query: 122 GRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQ 181
           GRV+E+YGPEASGKTTLALH+IAEAQK+GGYCAF+DAEHALDP LAESIGV   +LLLSQ
Sbjct: 119 GRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQ 178

Query: 182 PDCGEQALGLADILIRSGSIXXXXXXXXXXXXPKTELDGEMGDAHVALQARLMSQAXXXX 241
           PDCGEQAL L D LIRSGS+            PK+ELDGEMGDAHVALQARLMSQA    
Sbjct: 179 PDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRKL 238

Query: 242 XXXXXXXXTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSE 301
                   T+L+FINQ+RSK++TF GFG P EVT GGNALKFYASVR+N KRIGL+KK E
Sbjct: 239 SHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGE 298

Query: 302 EVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIEVGFKHKFITK-SGVFYHLN 360
           E +G+Q+ VKIVKNKHAPPFKT   ELEFGKG+ R  E+IE+G KHK + K  G FY  N
Sbjct: 299 ETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSFN 358

Query: 361 GQNFHGKDALKCYLAENKNVLESLMSMIKESIMQQESHPDRNMEDANPDTSITEEFVSAT 420
            +++ GKDALK YL EN+++ + L + +++ +M+ ++ P +  ++ +  + + EE + AT
Sbjct: 359 EESYRGKDALKSYLNENESIAKELETNLRK-LMETQA-PKKQEDEGDFLSDLPEESL-AT 415

Query: 421 DEQVPEEVEA 430
           +    EE+ A
Sbjct: 416 ETSSEEELAA 425



>Os03g0639700 Similar to DNA repair protein recA, chloroplast precursor
           (Recombinase A)
          Length = 418

 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/357 (39%), Positives = 205/357 (57%), Gaps = 11/357 (3%)

Query: 45  FSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKEVPVIS 104
           F A G +   S ED   +  +  +  AL  A++ I S+FG+ S+  L  S G   V    
Sbjct: 50  FVAGGGNGALSGED---DPRLIDRQKALDAAMNDINSSFGKGSVTRLG-SAGGAFVETFP 105

Query: 105 TGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDP 164
           +G   LD ALG GGLPKGRVVE+YGPE+SGKTTLALH IAE QK GG    +DAEHA DP
Sbjct: 106 SGCLTLDFALG-GGLPKGRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 164

Query: 165 TLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIXXXXXXXXXXXXPKTELDGEMGD 224
             ++++GV  E+L++ QPD GE AL +AD + RSG+I            P+ E++GE+G 
Sbjct: 165 AYSKALGVDIENLIVCQPDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGM 224

Query: 225 AHVALQARLMSQAXXXXXXXXXXXXTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFY 284
             + LQARLMSQA              L+F+NQ+R K+  F  +G P EVT GG ALKF+
Sbjct: 225 QQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGVF--YGNP-EVTSGGIALKFF 281

Query: 285 ASVRLNTKRIGLIK--KSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIE 342
           ASVRL  + IG IK  K +E VG +++V++ K+K + P+K    E+ FG+G+S+   +++
Sbjct: 282 ASVRLEIRPIGKIKSAKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLD 341

Query: 343 VGFKHKFITKSGVFYHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKESIMQQESH 398
                + + K G +Y         G++    YL E+  + + +   ++  I +   H
Sbjct: 342 CAELMEVVAKKGSWYSYKEMRLGQGREKALQYLRESPTICDEIEKAVRAMIPEGARH 398



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,255,980
Number of extensions: 466833
Number of successful extensions: 1145
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1142
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 326
Effective length of database: 11,605,545
Effective search space: 3783407670
Effective search space used: 3783407670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)