Os03g0639700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA repair protein recA, chloroplast precursor (Recombinase A).
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Os03g0639700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA repair protein recA, chloroplast precursor (Recombinase A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.93 | 0.21 | 12.2 | -0.709 | 0.329 | 0.386 | -0.228 | 0.0337 | -0.317 | 19.8 | 26.4 | 252 | -- | -- |
| 19.91 | 0.208 | 12.2 | -0.71 | 0.338 | 0.386 | -0.243 | -- | -0.319 | 19.8 | 26.35 | 239 | -- | -- |
| 19.96 | 0.208 | 12.2 | -0.707 | 0.363 | 0.371 | -- | -0.0185 | -0.315 | 19.9 | 26.4 | 202 | -- | -- |
| 19.95 | 0.208 | 12.2 | -0.71 | 0.356 | 0.369 | -- | -- | -0.324 | 19.9 | 26.28 | 197 | -- | -- |
| 24.05 | 0.228 | 12.2 | -0.776 | -- | 0.54 | -- | -0.112 | -0.376 | -- | 26.34 | 316 | -- | -- |
| 26.2 | 0.24 | 12.2 | -0.6 | 0.587 | -- | -0.0803 | -- | -0.21 | 18.3 | -- | -- | -- | -- |
| 26.21 | 0.24 | 12.2 | -0.599 | 0.587 | -- | -- | -- | -0.21 | 18.3 | -- | -- | -- | -- |
| 24.08 | 0.229 | 12.2 | -0.754 | -- | 0.538 | -- | -- | -0.369 | -- | 26.4 | 317 | -- | -- |
| 32.66 | 0.266 | 12.2 | -- | 0.407 | 0.277 | -- | -- | -0.219 | 19.4 | 26.4 | 206 | -- | -- |
| 44.08 | 0.31 | 12.2 | -0.615 | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
| 35.68 | 0.279 | 12.2 | -- | 0.595 | -- | -- | -- | -0.143 | 18.2 | -- | -- | -- | -- |
| 38.65 | 0.29 | 12.2 | -- | -- | 0.461 | -- | -- | -0.266 | -- | 26.3 | 299 | -- | -- |
| 54.07 | 0.343 | 12.2 | -- | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 3 | 18.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 4 | 18.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 6 | 18.89 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 14 | 18.96 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 21 | 19.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 31 | 19.16 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 32 | 19.17 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 9 |
| 43 | 19.23 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 52 | 19.29 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 58 | 19.31 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 59 | 19.31 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 110 | 19.49 | temperature | 25 | 10 | > th | dose dependent | sin | 1 | NA |
| 129 | 19.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 150 | 19.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 164 | 19.62 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 184 | 19.69 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 195 | 19.72 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 230 | 19.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 239 | 19.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 259 | 19.87 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 14 |
| 270 | 19.89 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 12 |
| 375 | 20.07 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 16 |
| 400 | 20.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 417 | 20.14 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 14 |
| 429 | 20.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 11 |
| 456 | 20.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 472 | 20.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 479 | 20.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 505 | 20.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 507 | 20.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 636 | 20.40 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 11 |
| 644 | 20.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 687 | 20.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 9 |
| 719 | 20.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 723 | 20.50 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |
| 817 | 20.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |