Os11g0302700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RecA bacterial DNA recombination family protein.
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Os11g0302700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RecA bacterial DNA recombination family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.27 | 0.436 | 7.45 | 0.0578 | 0.603 | 0.991 | -0.554 | 2.13 | -0.175 | 6.97 | 25.52 | 419 | -- | -- |
| 90.58 | 0.443 | 7.4 | 0.42 | 0.601 | 0.874 | 0.00805 | -- | -0.0855 | 7.45 | 26.3 | 312 | -- | -- |
| 86.83 | 0.434 | 7.44 | 0.121 | 0.589 | 0.989 | -- | 1.79 | -0.152 | 7.28 | 25.7 | 375 | -- | -- |
| 90.55 | 0.443 | 7.4 | 0.435 | 0.596 | 0.889 | -- | -- | -0.0783 | 7.53 | 26.28 | 302 | -- | -- |
| 101.57 | 0.469 | 7.44 | 0.167 | -- | 1.26 | -- | 1.87 | -0.0881 | -- | 27.78 | 405 | -- | -- |
| 101.94 | 0.473 | 7.44 | 0.204 | 0.74 | -- | -0.0651 | -- | -0.275 | 6.93 | -- | -- | -- | -- |
| 101.95 | 0.473 | 7.44 | 0.203 | 0.74 | -- | -- | -- | -0.275 | 6.93 | -- | -- | -- | -- |
| 105.31 | 0.478 | 7.4 | 0.52 | -- | 1.21 | -- | -- | -0.0111 | -- | 28.51 | 395 | -- | -- |
| 95.15 | 0.454 | 7.39 | -- | 0.625 | 0.731 | -- | -- | -0.133 | 7.41 | 26.3 | 309 | -- | -- |
| 130.7 | 0.534 | 7.46 | 0.219 | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
| 103.04 | 0.475 | 7.45 | -- | 0.742 | -- | -- | -- | -0.298 | 6.92 | -- | -- | -- | -- |
| 111.78 | 0.492 | 7.42 | -- | -- | 1.03 | -- | -- | -0.102 | -- | 29.02 | 391 | -- | -- |
| 131.96 | 0.536 | 7.46 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 5 | 83.68 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 9 | 83.80 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 18 |
| 28 | 84.61 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 42 | 84.97 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 60 | 85.49 | wind | 9 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 65 | 85.61 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 20 |
| 67 | 85.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 70 | 85.70 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 18 |
| 72 | 85.76 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 75 | 85.83 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 105 | 86.29 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 22 |
| 120 | 86.51 | temperature | 25 | 270 | < th | dose independent | sin | 9 | NA |
| 132 | 86.59 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 164 | 86.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 168 | 86.99 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 174 | 87.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 234 | 87.37 | temperature | 25 | 270 | > th | dose independent | sin | 9 | NA |
| 249 | 87.46 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 298 | 87.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 302 | 87.74 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 319 | 87.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 325 | 87.84 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 23 |
| 354 | 87.95 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 376 | 88.01 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 392 | 88.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 400 | 88.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 574 | 88.48 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 586 | 88.51 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 12 |
| 589 | 88.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 598 | 88.55 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 649 | 88.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 744 | 88.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 764 | 88.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 792 | 89.03 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 23 |
| 817 | 89.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 845 | 89.15 | wind | 9 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 897 | 89.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 910 | 89.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 919 | 89.28 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 920 | 89.28 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 10 |
| 981 | 89.37 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 2 |