BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0302700 Os11g0302700|AK073931
(430 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19490.1 | chr2:8441732-8444006 FORWARD LENGTH=431 458 e-129
AT3G10140.1 | chr3:3134984-3137069 FORWARD LENGTH=390 294 5e-80
AT1G79050.1 | chr1:29737084-29740140 REVERSE LENGTH=440 239 2e-63
AT3G32920.1 | chr3:13485399-13486713 REVERSE LENGTH=227 231 4e-61
>AT2G19490.1 | chr2:8441732-8444006 FORWARD LENGTH=431
Length = 430
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/362 (62%), Positives = 275/362 (75%)
Query: 36 VSPRVQLWRFSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSY 95
V QL F+A+ K ++ S +G SE + KK+ ALQQALDQI S+FG+ SIM+L +
Sbjct: 26 VGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEIALQQALDQITSSFGKGSIMYLGRAV 85
Query: 96 GPKEVPVISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAF 155
P+ VPV STGSFALD+ALG+GGLPKGRVVEIYGPEASGKTTLALH+IAEAQK GG C F
Sbjct: 86 SPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVF 145
Query: 156 IDAEHALDPTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIXXXXXXXXXXXXPK 215
+DAEHALD +LA++IGV E+LLLSQPDCGEQAL L D LIRSGS+ PK
Sbjct: 146 VDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPK 205
Query: 216 TELDGEMGDAHVALQARLMSQAXXXXXXXXXXXXTMLVFINQVRSKLSTFSGFGAPAEVT 275
EL+GEMGDAH+A+QARLMSQA T+L+FINQVRSKLSTF GFG P EVT
Sbjct: 206 GELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQTLLIFINQVRSKLSTFGGFGGPTEVT 265
Query: 276 CGGNALKFYASVRLNTKRIGLIKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLS 335
CGGNALKFYAS+RLN KRIGLIKK EE G+Q+ VKIVKNK APPF+T ELEFGKG+
Sbjct: 266 CGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSVKIVKNKLAPPFRTAQFELEFGKGIC 325
Query: 336 RELEIIEVGFKHKFITKSGVFYHLNGQNFHGKDALKCYLAENKNVLESLMSMIKESIMQQ 395
+ EII++ KHKFI K+G FY+LNG+N+HGK+ALK +L +N++ E LM +++ ++
Sbjct: 326 KITEIIDLSIKHKFIAKNGTFYNLNGKNYHGKEALKRFLKQNESDQEELMKKLQDKLIAD 385
Query: 396 ES 397
E+
Sbjct: 386 EA 387
>AT3G10140.1 | chr3:3134984-3137069 FORWARD LENGTH=390
Length = 389
Score = 294 bits (753), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 149/330 (45%), Positives = 212/330 (64%)
Query: 65 IKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPKGRV 124
+ +KD AL AL Q+ F ++S + L Y + V VISTGS LD+ALG+GGLPKGR+
Sbjct: 59 VAEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPKGRM 118
Query: 125 VEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQPDC 184
VE+YG EASGKTTLALHII EAQK GGYCA++DAE+A+DP+LAESIGV E LL+S+P
Sbjct: 119 VEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPSS 178
Query: 185 GEQALGLADILIRSGSIXXXXXXXXXXXXPKTELDGEMGDAHVALQARLMSQAXXXXXXX 244
E+ L + D+L +SGS+ P+ ELD +G+ + Q+R+M+QA
Sbjct: 179 AEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHYS 238
Query: 245 XXXXXTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSEEVV 304
T++VF+NQVRS + + F EVTCGGNAL F+A++RL R GLIK + ++
Sbjct: 239 VGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKIS 298
Query: 305 GTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIEVGFKHKFITKSGVFYHLNGQNF 364
G + V++VKNK AP K L + FG G E E++E+ +H I + G Y + G+
Sbjct: 299 GLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEVI 358
Query: 365 HGKDALKCYLAENKNVLESLMSMIKESIMQ 394
GKDA + YL ENK L++++++++ + +
Sbjct: 359 EGKDAAEKYLVENKEALDTVVAILRNQLFK 388
>AT1G79050.1 | chr1:29737084-29740140 REVERSE LENGTH=440
Length = 439
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 209/358 (58%), Gaps = 8/358 (2%)
Query: 44 RFSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKEVPVI 103
+ S+E D+ N + +++ + AL+ A++ I S+FG+ S+ L S G V
Sbjct: 59 KISSEFDDRINGALSPDADSRFLDRQKALEAAMNDINSSFGKGSVTRLG-SAGGALVETF 117
Query: 104 STGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALD 163
S+G LD+ALG GGLPKGRVVEIYGPE+SGKTTLALH IAE QK GG +DAEHA D
Sbjct: 118 SSGILTLDLALG-GGLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD 176
Query: 164 PTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIXXXXXXXXXXXXPKTELDGEMG 223
P ++++GV E+L++ QPD GE AL AD + RSG++ P+ E++GE+G
Sbjct: 177 PAYSKALGVDVENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIG 236
Query: 224 DAHVALQARLMSQAXXXXXXXXXXXXTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKF 283
+ LQARLMSQA L+F+NQ+R K+ + +G P EVT GG ALKF
Sbjct: 237 MQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY--YGNP-EVTSGGIALKF 293
Query: 284 YASVRLNTKRIGLIK--KSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEII 341
+ASVRL + G IK K +E +G + +V++ K+K + P+K E+ FG+G+S+ ++
Sbjct: 294 FASVRLEIRSAGKIKSSKGDEDIGLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVL 353
Query: 342 EVGFKHKFITKSGVFYHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKESIMQQESH 398
+ + + K G +Y Q G++ +L EN + + + ++ ++ E H
Sbjct: 354 DCAEIMEVVVKKGSWYSYEDQRLGQGREKALQHLRENPALQDEIEKKVRLLMLDGEVH 411
>AT3G32920.1 | chr3:13485399-13486713 REVERSE LENGTH=227
Length = 226
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/214 (57%), Positives = 146/214 (68%), Gaps = 21/214 (9%)
Query: 89 MWLNHSYGPKEVPVISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIAEAQK 148
M+L+ + P+ VPV STGSFALD+ALG+GGLPKGR+VEIYGPEASGKT LALH+++
Sbjct: 1 MYLSRAVSPRNVPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLS---- 56
Query: 149 NGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIXXXXXXX 208
L +LA++IGV E+LLLSQPDCG+QAL L D LI+SGS+
Sbjct: 57 -----------MLLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDS 105
Query: 209 XXXXXPKTELDGEMGDAHVALQARLMSQAXXXXXXXXXXXXTMLVFINQVRSKLSTFSGF 268
PK ELDGEMGDAH+A+QARLMSQA T+L+FINQVR + F
Sbjct: 106 VAALVPKGELDGEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRER------F 159
Query: 269 GAPAEVTCGGNALKFYASVRLNTKRIGLIKKSEE 302
G P EVT GGNALKFYA +RL+ KRIGLIKK EE
Sbjct: 160 GGPTEVTSGGNALKFYAPMRLDIKRIGLIKKGEE 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,038,403
Number of extensions: 316485
Number of successful extensions: 933
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 928
Number of HSP's successfully gapped: 4
Length of query: 430
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 329
Effective length of database: 8,337,553
Effective search space: 2743054937
Effective search space used: 2743054937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)