Os01g0901200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RecA protein (Fragment).
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Os01g0901200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RecA protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.82 | 0.448 | 10.9 | 1.12 | 2.18 | 1 | 0.649 | -2.39 | -0.0467 | 18 | 24.52 | 87 | -- | -- |
| 93.13 | 0.449 | 10.9 | 1.42 | 2.21 | 0.798 | 0.324 | -- | 0.0304 | 17.9 | 24.16 | 86 | -- | -- |
| 91.73 | 0.446 | 10.9 | 1.15 | 2.18 | 0.988 | -- | -1.89 | -0.0454 | 18 | 24.21 | 86 | -- | -- |
| 93.41 | 0.45 | 10.9 | 1.42 | 2.2 | 0.808 | -- | -- | 0.0311 | 17.9 | 24.14 | 86 | -- | -- |
| 247.23 | 0.732 | 10.9 | 0.884 | -- | 2.38 | -- | -1.92 | -0.14 | -- | 24.2 | 273 | -- | -- |
| 103.36 | 0.477 | 10.9 | 1.56 | 2.49 | -- | 0.601 | -- | 0.125 | 17.7 | -- | -- | -- | -- |
| 104.24 | 0.478 | 10.9 | 1.56 | 2.49 | -- | -- | -- | 0.127 | 17.6 | -- | -- | -- | -- |
| 251.14 | 0.738 | 10.9 | 1.08 | -- | 2.47 | -- | -- | -0.167 | -- | 24.3 | 293 | -- | -- |
| 142.71 | 0.556 | 10.9 | -- | 2.08 | 1.18 | -- | -- | -0.206 | 18.2 | 22.8 | 84 | -- | -- |
| 427.14 | 0.966 | 10.8 | 1.48 | -- | -- | -- | -- | 0.0675 | -- | -- | -- | -- | -- |
| 168.24 | 0.607 | 10.9 | -- | 2.47 | -- | -- | -- | -0.0463 | 17.7 | -- | -- | -- | -- |
| 280.76 | 0.78 | 10.9 | -- | -- | 2.63 | -- | -- | -0.309 | -- | 24.2 | 294 | -- | -- |
| 484.79 | 1.03 | 10.9 | -- | -- | -- | -- | -- | -0.0965 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 2 | 78.04 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 4 | 78.12 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 17 |
| 9 | 79.12 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 13 | 79.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 28 | 80.42 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 34 | 80.76 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 47 | 81.29 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 58 | 81.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 81 | 82.39 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 87 | 82.54 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 90 | 82.61 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 100 | 82.80 | temperature | 10.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 113 | 83.00 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 123 | 83.16 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 17 |
| 125 | 83.17 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 131 | 83.22 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 134 | 83.24 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 146 | 83.36 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 174 | 83.67 | temperature | 30.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 187 | 83.82 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 207 | 84.01 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 212 | 84.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 213 | 84.05 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 225 | 84.14 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 239 | 84.21 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 242 | 84.26 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 245 | 84.29 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 248 | 84.32 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 17 |
| 260 | 84.40 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 270 | 84.51 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 315 | 84.86 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 318 | 84.87 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 324 | 84.90 | temperature | 25.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 333 | 84.93 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 340 | 84.97 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 22 |
| 343 | 84.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 19 |
| 345 | 84.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 364 | 85.12 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 365 | 85.12 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 388 | 85.21 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 395 | 85.23 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 400 | 85.24 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 488 | 85.63 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 511 | 85.77 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 518 | 85.82 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 537 | 85.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 560 | 85.99 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 577 | 86.03 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 580 | 86.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 581 | 86.04 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 11 |
| 582 | 86.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 586 | 86.06 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 601 | 86.11 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 627 | 86.21 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 631 | 86.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 633 | 86.22 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 634 | 86.22 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 636 | 86.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 637 | 86.22 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 638 | 86.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 649 | 86.28 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 714 | 86.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 729 | 86.52 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 741 | 86.54 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 759 | 86.61 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 819 | 86.76 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 830 | 86.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 836 | 86.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 838 | 86.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 839 | 86.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 841 | 86.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 842 | 86.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 843 | 86.81 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 844 | 86.81 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 845 | 86.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 862 | 86.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 870 | 86.86 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 895 | 86.93 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 899 | 86.94 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 917 | 86.98 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 931 | 87.02 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 943 | 87.04 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 955 | 87.06 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 969 | 87.09 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 7 |
| 986 | 87.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 988 | 87.14 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 8 |