BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0901200 Os01g0901200|AK103365
         (429 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0901200  Similar to RecA protein (Fragment)                  697   0.0  
Os11g0302700  RecA bacterial DNA recombination family protein     454   e-128
Os03g0639700  Similar to DNA repair protein recA, chloroplas...   269   4e-72

>Os01g0901200 Similar to RecA protein (Fragment)
          Length = 429

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/407 (85%), Positives = 350/407 (85%)

Query: 23  PCPESYKQGICGSTFHCRYFXXXXXXXXXXXXXXXXEENLSKKDLALHQAIDQITSAFGK 82
           PCPESYKQGICGSTFHCRYF                EENLSKKDLALHQAIDQITSAFGK
Sbjct: 23  PCPESYKQGICGSTFHCRYFSSKAKKKTKSSGTDSGEENLSKKDLALHQAIDQITSAFGK 82

Query: 83  GAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAE 142
           GAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAE
Sbjct: 83  GAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAE 142

Query: 143 AQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGXXXXXX 202
           AQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSG      
Sbjct: 143 AQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVV 202

Query: 203 XXXXXXLVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTF 262
                 LVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTF
Sbjct: 203 VDSVAALVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTF 262

Query: 263 GGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQ 322
           GGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQ
Sbjct: 263 GGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQ 322

Query: 323 FELEFGKGICRSSELIEXXXXXXXXXXXXXAFYSFNEESYRGKDALKSYLNENESIAKEL 382
           FELEFGKGICRSSELIE             AFYSFNEESYRGKDALKSYLNENESIAKEL
Sbjct: 323 FELEFGKGICRSSELIELGLKHKLVKKLGGAFYSFNEESYRGKDALKSYLNENESIAKEL 382

Query: 383 ETNLRKLMETQAPKKQEDEGDFLSDLPXXXXXXXXXXXXXXXXVIEA 429
           ETNLRKLMETQAPKKQEDEGDFLSDLP                VIEA
Sbjct: 383 ETNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELAAVIEA 429



>Os11g0302700 RecA bacterial DNA recombination family protein
          Length = 430

 Score =  454 bits (1167), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/345 (65%), Positives = 267/345 (77%), Gaps = 4/345 (1%)

Query: 59  EENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPK 118
           E N+ KKD AL QA+DQI SAFG+ +IMWL  S G +EVPV+STGSF+LD+ALG GGLPK
Sbjct: 62  EANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPK 121

Query: 119 GRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQ 178
           GRV+E+YGPEASGKTTLALH+IAEAQK+GGYCAF+DAEHALDP LAESIGV   +LLLSQ
Sbjct: 122 GRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQ 181

Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHVALQARLMSQALRKL 238
           PDCGEQAL L D LIRSG            LVPK+ELDGEMGDAHVALQARLMSQALRKL
Sbjct: 182 PDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRKL 241

Query: 239 SHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGE 298
           SHSLS S+T+L+FINQ+RSK++TF GFG P EVT GGNALKFYASVR+N KRIGL+KK E
Sbjct: 242 SHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSE 301

Query: 299 ETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIEXXXXXXXXXXXXXAFYSFN 358
           E +G+Q+ VKIVKNKHAPPFKT   ELEFGKG+ R  E+IE              FY  N
Sbjct: 302 EVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIE-VGFKHKFITKSGVFYHLN 360

Query: 359 EESYRGKDALKSYLNENESIAKELETNLRKLM---ETQAPKKQED 400
            +++ GKDALK YL EN+++ + L + +++ +   E+   +  ED
Sbjct: 361 GQNFHGKDALKCYLAENKNVLESLMSMIKESIMQQESHPDRNMED 405



>Os03g0639700 Similar to DNA repair protein recA, chloroplast precursor
           (Recombinase A)
          Length = 418

 Score =  269 bits (687), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/341 (44%), Positives = 217/341 (63%), Gaps = 21/341 (6%)

Query: 59  EENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPK 118
           +  L  +  AL  A++ I S+FGKG++  LG S G   V    +G  +LD ALG GGLPK
Sbjct: 64  DPRLIDRQKALDAAMNDINSSFGKGSVTRLG-SAGGAFVETFPSGCLTLDFALG-GGLPK 121

Query: 119 GRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQ 178
           GRV+EVYGPE+SGKTTLALH IAE QK GG    VDAEHA DPA ++++GV+  NL++ Q
Sbjct: 122 GRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQ 181

Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHVALQARLMSQALRKL 238
           PD GE AL + D + RSG            L P++E++GE+G   + LQARLMSQALRK+
Sbjct: 182 PDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKM 241

Query: 239 SHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVK--K 296
           S + S +   L+F+NQIR K+  F  +G P EVTSGG ALKF+ASVR+ I+ IG +K  K
Sbjct: 242 SGNASKAGCTLMFLNQIRYKIGVF--YGNP-EVTSGGIALKFFASVRLEIRPIGKIKSAK 298

Query: 297 GEETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICR------SSELIEXXXXXXXXXXX 350
           G+E +G +V V++ K+K + P+K A+FE+ FG+G+ +       +EL+E           
Sbjct: 299 GDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELME-------VVAK 351

Query: 351 XXAFYSFNEESY-RGKDALKSYLNENESIAKELETNLRKLM 390
             ++YS+ E    +G++    YL E+ +I  E+E  +R ++
Sbjct: 352 KGSWYSYKEMRLGQGREKALQYLRESPTICDEIEKAVRAMI 392



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,306,588
Number of extensions: 411263
Number of successful extensions: 1395
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1389
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 325
Effective length of database: 11,605,545
Effective search space: 3771802125
Effective search space used: 3771802125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)