BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0901200 Os01g0901200|AK103365
(429 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19490.1 | chr2:8441732-8444006 FORWARD LENGTH=431 485 e-137
AT3G10140.1 | chr3:3134984-3137069 FORWARD LENGTH=390 281 4e-76
AT3G32920.1 | chr3:13485399-13486713 REVERSE LENGTH=227 266 1e-71
AT1G79050.1 | chr1:29737084-29740140 REVERSE LENGTH=440 265 3e-71
>AT2G19490.1 | chr2:8441732-8444006 FORWARD LENGTH=431
Length = 430
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 243/373 (65%), Positives = 289/373 (77%), Gaps = 2/373 (0%)
Query: 26 ESYKQGICGSTFHCRYFXXXXXXXXXXXXXXXXEENLSKKDLALHQAIDQITSAFGKGAI 85
E ++ + G++F R F EE +SKK++AL QA+DQITS+FGKG+I
Sbjct: 19 ELLRRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEIALQQALDQITSSFGKGSI 78
Query: 86 MWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQK 145
M+LGR+ R VPV STGSF+LD+ALG GGLPKGRV+E+YGPEASGKTTLALHVIAEAQK
Sbjct: 79 MYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQK 138
Query: 146 HGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXX 205
GG C FVDAEHALD +LA++IGVNT NLLLSQPDCGEQALSLVDTLIRSG
Sbjct: 139 QGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDS 198
Query: 206 XXXLVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGF 265
LVPK EL+GEMGDAH+A+QARLMSQALRKLSHSLSLSQT+L+FINQ+RSK++TFGGF
Sbjct: 199 VAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQTLLIFINQVRSKLSTFGGF 258
Query: 266 GGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFEL 325
GGP EVT GGNALKFYAS+R+NIKRIGL+KKGEET GSQV VKIVKNK APPF+TAQFEL
Sbjct: 259 GGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSVKIVKNKLAPPFRTAQFEL 318
Query: 326 EFGKGICRSSELIEXXXXXXXXXXXXXAFYSFNEESYRGKDALKSYLNENESIAKELETN 385
EFGKGIC+ +E+I+ FY+ N ++Y GK+ALK +L +NES +EL
Sbjct: 319 EFGKGICKITEIID-LSIKHKFIAKNGTFYNLNGKNYHGKEALKRFLKQNESDQEELMKK 377
Query: 386 LR-KLMETQAPKK 397
L+ KL+ +A K
Sbjct: 378 LQDKLIADEAADK 390
>AT3G10140.1 | chr3:3134984-3137069 FORWARD LENGTH=390
Length = 389
Score = 281 bits (720), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 207/318 (65%), Gaps = 1/318 (0%)
Query: 59 EENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPK 118
+ +++KD ALH A+ Q++ F K + + L R +R V V+STGS +LDLALG GGLPK
Sbjct: 56 DRKVAEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPK 115
Query: 119 GRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQ 178
GR++EVYG EASGKTTLALH+I EAQK GGYCA++DAE+A+DP+LAESIGVNT LL+S+
Sbjct: 116 GRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISR 175
Query: 179 PDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHVALQARLMSQALRKL 238
P E+ L++VD L +SG L P+ ELD +G+ + Q+R+M+QALRK+
Sbjct: 176 PSSAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKI 235
Query: 239 SHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGE 298
+S+ SQT+++F+NQ+RS V + F EVT GGNAL F+A++R+ + R GL+K
Sbjct: 236 HYSVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTAN 295
Query: 299 ETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIEXXXXXXXXXXXXXAFYSFN 358
+ G V V++VKNK AP K ++ + FG G E++E +++
Sbjct: 296 KISGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYF-IE 354
Query: 359 EESYRGKDALKSYLNENE 376
E GKDA + YL EN+
Sbjct: 355 GEVIEGKDAAEKYLVENK 372
>AT3G32920.1 | chr3:13485399-13486713 REVERSE LENGTH=227
Length = 226
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/214 (64%), Positives = 162/214 (75%), Gaps = 21/214 (9%)
Query: 86 MWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQK 145
M+L R+ R VPV STGSF+LD+ALG GGLPKGR++E+YGPEASGKT LALH+++
Sbjct: 1 MYLSRAVSPRNVPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLS---- 56
Query: 146 HGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXX 205
L +LA++IGVNT NLLLSQPDCG+QALSLVDTLI+SG
Sbjct: 57 -----------MLLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDS 105
Query: 206 XXXLVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGF 265
LVPK ELDGEMGDAH+A+QARLMSQALRK SHSL LSQT+L+FINQ+R + F
Sbjct: 106 VAALVPKGELDGEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRER------F 159
Query: 266 GGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEE 299
GGP EVTSGGNALKFYA +R++IKRIGL+KKGEE
Sbjct: 160 GGPTEVTSGGNALKFYAPMRLDIKRIGLIKKGEE 193
>AT1G79050.1 | chr1:29737084-29740140 REVERSE LENGTH=440
Length = 439
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 212/326 (65%), Gaps = 9/326 (2%)
Query: 68 ALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKGRVIEVYGP 127
AL A++ I S+FGKG++ LG S G V S+G +LDLALG GGLPKGRV+E+YGP
Sbjct: 86 ALEAAMNDINSSFGKGSVTRLG-SAGGALVETFSSGILTLDLALG-GGLPKGRVVEIYGP 143
Query: 128 EASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQPDCGEQALS 187
E+SGKTTLALH IAE QK GG VDAEHA DPA ++++GV+ NL++ QPD GE AL
Sbjct: 144 ESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALE 203
Query: 188 LVDTLIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHVALQARLMSQALRKLSHSLSLSQT 247
D + RSG L P++E++GE+G + LQARLMSQALRK+S + S +
Sbjct: 204 TADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGC 263
Query: 248 ILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVK--KGEETIGSQV 305
L+F+NQIR K+ + +G P EVTSGG ALKF+ASVR+ I+ G +K KG+E IG +
Sbjct: 264 TLIFLNQIRYKIGVY--YGNP-EVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRA 320
Query: 306 LVKIVKNKHAPPFKTAQFELEFGKGICRSSELIEXXXXXXXXXXXXXAFYSFNEESY-RG 364
V++ K+K + P+K A+FE+ FG+G+ + +++ ++YS+ ++ +G
Sbjct: 321 RVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLD-CAEIMEVVVKKGSWYSYEDQRLGQG 379
Query: 365 KDALKSYLNENESIAKELETNLRKLM 390
++ +L EN ++ E+E +R LM
Sbjct: 380 REKALQHLRENPALQDEIEKKVRLLM 405
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,279,620
Number of extensions: 268525
Number of successful extensions: 1029
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 4
Length of query: 429
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 328
Effective length of database: 8,337,553
Effective search space: 2734717384
Effective search space used: 2734717384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)