BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0264300 Os11g0264300|AK064859
(392 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0264300 Plant regulator RWP-RK domain containing protein 817 0.0
Os04g0495800 Similar to NIN-like protein 2 (Fragment) 369 e-102
Os01g0236700 Plant regulator RWP-RK domain containing protein 251 5e-67
Os03g0131100 Plant regulator RWP-RK domain containing protein 234 8e-62
>Os11g0264300 Plant regulator RWP-RK domain containing protein
Length = 392
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVND 60
MEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVND
Sbjct: 1 MEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVND 60
Query: 61 TRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHARKFGLHAAV 120
TRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHARKFGLHAAV
Sbjct: 61 TRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHARKFGLHAAV 120
Query: 121 AIRLQSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMRRVCKSLRTVSDAELKEDV 180
AIRLQSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMRRVCKSLRTVSDAELKEDV
Sbjct: 121 AIRLQSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMRRVCKSLRTVSDAELKEDV 180
Query: 181 TRKPSNENRSGTRCPSPVNLIYSGREIDVSNETKTNTPLEYQIEGIDEQLSDTKSTNKLI 240
TRKPSNENRSGTRCPSPVNLIYSGREIDVSNETKTNTPLEYQIEGIDEQLSDTKSTNKLI
Sbjct: 181 TRKPSNENRSGTRCPSPVNLIYSGREIDVSNETKTNTPLEYQIEGIDEQLSDTKSTNKLI 240
Query: 241 KCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPS 300
KCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPS
Sbjct: 241 KCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPS 300
Query: 301 RKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKENMQAK 360
RKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKENMQAK
Sbjct: 301 RKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKENMQAK 360
Query: 361 MYSTNCRISKMVKLILTWTMENYFETHILPEH 392
MYSTNCRISKMVKLILTWTMENYFETHILPEH
Sbjct: 361 MYSTNCRISKMVKLILTWTMENYFETHILPEH 392
>Os04g0495800 Similar to NIN-like protein 2 (Fragment)
Length = 936
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/343 (54%), Positives = 245/343 (71%), Gaps = 10/343 (2%)
Query: 2 EIFDVLQAVCQAHLLPLALAWIPVCSKRDV-LVSVEYGANFGKRNKEVLCIEESACYVND 60
EI DVL+A+C AH+LPLAL W+P + D V + GA+F + K ++ I ESACYVND
Sbjct: 315 EILDVLRAICHAHMLPLALTWVPTSNGIDGGYVVGKDGASFSQSGKTIIRIHESACYVND 374
Query: 61 TRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHARKFGLHAAV 120
+M+ F+Q CA LEKGQG+AG A SN PFFS D+++Y + YPL +HARKF LHAAV
Sbjct: 375 GKMQGFLQACARRHLEKGQGIAGRALKSNLPFFSPDIREYSIEDYPLAHHARKFSLHAAV 434
Query: 121 AIRLQSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMRRVCKSLRTVSDAELKEDV 180
AIRL+STYT NDDY+LEFFLPV CKG GEQQ+LL+++S+TM+R+CKSLRTV +AE+ ++V
Sbjct: 435 AIRLRSTYTGNDDYILEFFLPVSCKGSGEQQMLLNNLSSTMQRICKSLRTVYEAEV-DNV 493
Query: 181 TRKPSNENRSGTRCPSPVNLIYSGREID--VSNETKTNTPLEYQIEGIDEQLSDTKSTNK 238
+ R P S D ++ + +T L + ++ +L++
Sbjct: 494 NAGTAAVFRKNNESCLPTGHTESSSHGDQSITGASFEDTSLANKPGVMEPELAEQ----- 548
Query: 239 LIKCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRW 298
++ S+ EK+RS+ EK++SL VL++YFSGSLKDAAKS+GVCPTTLKRICR HGISRW
Sbjct: 549 -VQPSSIGHAEKKRSTAEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRW 607
Query: 299 PSRKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVS 341
PSRKI KVNRSLKKIQ VI+SVHGV+ L+YDP+TG LV VS
Sbjct: 608 PSRKINKVNRSLKKIQTVINSVHGVDRSLQYDPATGSLVPVVS 650
>Os01g0236700 Plant regulator RWP-RK domain containing protein
Length = 938
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 203/378 (53%), Gaps = 44/378 (11%)
Query: 1 MEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEES------ 54
+EI ++L VC+ H LPLA W+P C R VL A+ G K L + S
Sbjct: 315 VEILEILTVVCEEHKLPLAQTWVP-CKYRSVL------AHGGGVKKSCLSFDGSCMGEVC 367
Query: 55 ------ACYVNDTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLV 108
A +V D M F C EH L+KGQGV+G A++ P FS D+ + YPLV
Sbjct: 368 MSTSDVAFHVIDAHMWGFRDACVEHHLQKGQGVSGKAFIYRRPCFSKDISQFCKLEYPLV 427
Query: 109 NHARKFGLHAAVAIRLQSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMRRVCKSL 168
++AR FGL AI LQS YT +DDY+LEFFLP C+ +Q LL+SI A M++ ++L
Sbjct: 428 HYARMFGLAGCFAICLQSMYTGDDDYILEFFLPPNCRNEDDQNALLESILARMKKCLRTL 487
Query: 169 RTVSDAELKE--------------DVTRKPSNENRSGTRCPSP-VNLIYSGREIDVSNET 213
+ V + + E D+ EN G SP N E+D ++
Sbjct: 488 KVVGNGDTNEVCLQISNVLIIETEDLKTNVHFENSEGCFRESPESNGSQRVHEVD-NDGN 546
Query: 214 KTNTPLEYQIEGIDEQLSDTKSTNKLIKCSNASDG--------EKRRSSTEKSVSLSVLQ 265
K + E + D ++ S + S ASD E+RR EK++SL VLQ
Sbjct: 547 KVSIMSERHLLADDNSQNNGASVGR-PNGSGASDSLHKSNKPPERRRGKAEKTISLDVLQ 605
Query: 266 QYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKVNRSLKKIQNVISSVHGVEG 325
QYFSGSLK+AAKS+GVCPTT+KRICRQHGISRWPSRKI KVNRSL K++ VI SV G +
Sbjct: 606 QYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKQVIESVQGSDA 665
Query: 326 VLKYDPSTGCLVSSVSPS 343
TG L V PS
Sbjct: 666 AFNLTSITGPLPIPVGPS 683
>Os03g0131100 Plant regulator RWP-RK domain containing protein
Length = 942
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 156/392 (39%), Positives = 207/392 (52%), Gaps = 77/392 (19%)
Query: 2 EIFDVLQAVCQAHLLPLALAWIP-VC-SKRDVLVSVEYGANFGKRNKEVLCIEESACYVN 59
EI DVL+AVC H LPLA WIP +C +KR S E K + + ACYV
Sbjct: 313 EIMDVLRAVCDTHNLPLAQTWIPCICQAKRGSRHSDE-------SYKHCVSTVDEACYVR 365
Query: 60 DTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHARKFGLHAA 119
D + F Q C+EH L +G+GV G A+ +N P FS D+ Y YPL +HA+ FGL AA
Sbjct: 366 DCSVLGFHQACSEHHLFRGEGVVGRAFGTNEPCFSPDITTYSKTQYPLSHHAKLFGLRAA 425
Query: 120 VAIRLQSTYTKNDDYVLEFFLPVLCKGGGEQQLLLDSISATMR------RVCKSLRTVSD 173
VAI+L+S T + D+VLEFFLP+ C EQ+ +L+S+S T++ RV K V+D
Sbjct: 426 VAIQLRSVKTGSLDFVLEFFLPMKCINTEEQRAMLNSLSNTIQQVCYTLRVVKPKELVND 485
Query: 174 AELKEDVTRKPS----------NENRSGTRCPSPVNLIYSGREI--------DVSN---- 211
+ +P +E SG P + + E+ D N
Sbjct: 486 GPFEISQPTRPEFYAKSVHEDLDELCSGINVPGRTTSLEASEEVSSWIASLVDAQNKGGK 545
Query: 212 -ETKTNTPLEYQIEGIDEQLSDTKS--TNKLIKCSNASDG-------------------- 248
E + P + + DE S T T+ ++ A DG
Sbjct: 546 GEIDVDLPFGFSKQD-DEGFSVTAGWHTSPVM----APDGSMFSGFKRHEDYDVKENTCS 600
Query: 249 ------------EKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIS 296
EKRR+ TEK+VSL L+++F+GSLK+AAK++GVCPTTLKRICRQHGI+
Sbjct: 601 SDPSNSNSDKAVEKRRTKTEKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGIN 660
Query: 297 RWPSRKIKKVNRSLKKIQNVISSVHGVEGVLK 328
RWPSRKIKKV SLKK+Q VI SVHG EG ++
Sbjct: 661 RWPSRKIKKVGHSLKKLQMVIDSVHGPEGTVQ 692
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,060,599
Number of extensions: 525632
Number of successful extensions: 1286
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)