BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0256300 Os11g0256300|AK066271
(111 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0256300 Zinc finger, GRF-type domain containing protein 196 4e-51
Os10g0451400 138 9e-34
Os02g0508200 135 6e-33
Os08g0462000 132 5e-32
Os05g0381301 130 2e-31
Os12g0186200 129 4e-31
Os07g0137400 124 2e-29
Os06g0245100 124 2e-29
Os05g0272001 123 3e-29
Os05g0509650 123 3e-29
Os03g0615700 Conserved hypothetical protein 117 2e-27
Os03g0612800 111 1e-25
Os04g0245800 106 4e-24
Os03g0274400 Hypothetical protein 82 6e-17
Os07g0103000 Hypothetical protein 73 4e-14
Os12g0198650 62 7e-11
>Os11g0256300 Zinc finger, GRF-type domain containing protein
Length = 111
Score = 196 bits (497), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT
Sbjct: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
Query: 80 TFIREVLNDLRDAVWSARREKERLVWLSKKRG 111
TFIREVLNDLRDAVWSARREKERLVWLSKKRG
Sbjct: 80 TFIREVLNDLRDAVWSARREKERLVWLSKKRG 111
>Os10g0451400
Length = 171
Score = 138 bits (348), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 71/81 (87%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PIPYRVGPF+Y+ AV+C C +KAA WISWS DNP RRYFKCRNA++GGC FYAW+DGPT+
Sbjct: 21 PIPYRVGPFEYEPAVLCRCELKAARWISWSVDNPGRRYFKCRNARKGGCDFYAWHDGPTS 80
Query: 80 TFIREVLNDLRDAVWSARREK 100
+F+REVLNDLR AV S RREK
Sbjct: 81 SFLREVLNDLRGAVHSLRREK 101
>Os02g0508200
Length = 186
Score = 135 bits (341), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PIPYR GPF+YQ AV+C+C KAA WISWS DNP RRYFKC +A+ GGC FY W++GPT+
Sbjct: 20 PIPYRAGPFEYQPAVLCNCGAKAARWISWSRDNPGRRYFKCSDARNGGCEFYKWFEGPTS 79
Query: 80 TFIREVLNDLRDAVWSARREKERL 103
+FIR++LNDLRDAVWS R EKE+L
Sbjct: 80 SFIRDLLNDLRDAVWSLRMEKEQL 103
>Os08g0462000
Length = 171
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 69/81 (85%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PIPYRVGPF+Y+ AV+C C +KAA WISWS DNP RYFKCRNA++GGC FYAW+DGPT+
Sbjct: 21 PIPYRVGPFEYEPAVLCRCELKAARWISWSVDNPGCRYFKCRNARKGGCDFYAWHDGPTS 80
Query: 80 TFIREVLNDLRDAVWSARREK 100
+F REVLNDLR AV S RREK
Sbjct: 81 SFPREVLNDLRGAVHSLRREK 101
>Os05g0381301
Length = 173
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 70/84 (83%), Gaps = 2/84 (2%)
Query: 20 PIPYRVGPFDYQSAVMCDCR--VKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGP 77
P+PYRVGP +YQ AVMC CR KAA WISWS DNP RRY+KC+NA++GGC F+AWYDGP
Sbjct: 19 PVPYRVGPLEYQPAVMCRCRPPAKAARWISWSTDNPGRRYYKCQNARQGGCDFWAWYDGP 78
Query: 78 TTTFIREVLNDLRDAVWSARREKE 101
T++FIRE+LNDLRD V S RRE E
Sbjct: 79 TSSFIRELLNDLRDRVNSLRRENE 102
>Os12g0186200
Length = 172
Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 2/84 (2%)
Query: 20 PIPYRVGPFDYQSAVMCDCR--VKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGP 77
P+PYRVGP +YQ AVMC CR KA WISWS DNP RRY+KC+NA++GGC F+AWYDGP
Sbjct: 19 PVPYRVGPLEYQPAVMCRCRPLAKAVRWISWSMDNPGRRYYKCQNARQGGCDFWAWYDGP 78
Query: 78 TTTFIREVLNDLRDAVWSARREKE 101
T++FIRE+LNDLRD V S RRE E
Sbjct: 79 TSSFIRELLNDLRDRVNSLRRENE 102
>Os07g0137400
Length = 111
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 67/84 (79%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
P+PYRVGP +YQ V C C+ KAA WISWS DNP RRYFKCRNAQ+GGC F+ W D T+
Sbjct: 18 PVPYRVGPMEYQPPVFCRCKAKAARWISWSVDNPGRRYFKCRNAQDGGCDFFDWCDKLTS 77
Query: 80 TFIREVLNDLRDAVWSARREKERL 103
+F+RE+LNDLRDAV S R EK++L
Sbjct: 78 SFLRELLNDLRDAVMSLRMEKDQL 101
>Os06g0245100
Length = 130
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 20 PIPYRVGPFDYQSAVMCDC--RVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGP 77
P+ YRVGP +YQ AVMC C KA WWISWS DNP RRY+KC+NA+EGGC F+ W DGP
Sbjct: 20 PVSYRVGPLNYQPAVMCRCCCPAKATWWISWSIDNPGRRYYKCQNAREGGCDFWVWCDGP 79
Query: 78 TTTFIREVLNDLRDAVWSARREKERL 103
TT+FI+E+LNDLRDAV RRE E L
Sbjct: 80 TTSFIKELLNDLRDAVTGLRRENEHL 105
>Os05g0272001
Length = 172
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Query: 20 PIPYRVGPFDYQSAVMCDCR--VKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGP 77
P+ Y VGP +YQ AVMC CR KAA WISWS DNP RRY+KC+NA++GGC F+AWYDGP
Sbjct: 19 PVRYWVGPLEYQPAVMCQCRPPAKAARWISWSTDNPGRRYYKCQNARQGGCDFWAWYDGP 78
Query: 78 TTTFIREVLNDLRDAVWSARREKE 101
T++FIRE+LNDLRD V S RRE E
Sbjct: 79 TSSFIRELLNDLRDRVNSLRRENE 102
>Os05g0509650
Length = 101
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 64/81 (79%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PIPYRVGP +YQ AV C C KAA WI WSPDNP RRYFKC +A+ GGC F+AW DGPT+
Sbjct: 20 PIPYRVGPLEYQPAVACRCGSKAARWILWSPDNPGRRYFKCADARSGGCDFFAWVDGPTS 79
Query: 80 TFIREVLNDLRDAVWSARREK 100
+F+REVLNDL D VW RREK
Sbjct: 80 SFLREVLNDLWDEVWKLRREK 100
>Os03g0615700 Conserved hypothetical protein
Length = 180
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 62/81 (76%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PIPYRVGP +Y+ AV+C KAA WISW PDNP RYFKC NA+ G C ++AW DGP+
Sbjct: 20 PIPYRVGPLEYEPAVVCRYSNKAARWISWIPDNPGCRYFKCVNARSGCCDYFAWVDGPSN 79
Query: 80 TFIREVLNDLRDAVWSARREK 100
+F+REVLNDLRD VW RREK
Sbjct: 80 SFVREVLNDLRDEVWKLRREK 100
>Os03g0612800
Length = 183
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 59/81 (72%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PI YRVGP +Y+ AV C C KA WIS DNP R YFKC NA+ GGC ++AW DGP +
Sbjct: 20 PILYRVGPLEYEPAVACKCGNKAVRWISRISDNPGRWYFKCVNARSGGCDYFAWVDGPLS 79
Query: 80 TFIREVLNDLRDAVWSARREK 100
+F+REVLNDLRD VW RREK
Sbjct: 80 SFLREVLNDLRDEVWKLRREK 100
>Os04g0245800
Length = 153
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFYAWYDGPTT 79
PIP RVGP+DYQ AVMC C KAA WIS S DNP R Y++CRN + GC F+ WY+ T+
Sbjct: 20 PIPARVGPYDYQPAVMCRCGAKAARWISGSVDNPGRWYYRCRN-RGAGCDFFDWYEPATS 78
Query: 80 TFIREVLNDLRDAVWSARREKERL 103
+F+RE+LNDL +AV S RREK L
Sbjct: 79 SFLRELLNDLHEAVLSLRREKNEL 102
>Os03g0274400 Hypothetical protein
Length = 68
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 41/52 (78%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQEGGCGFY 71
P+PYRVGP DYQ V CDC+ KAA WISWS DNP RRYFKCR+A+ GG F+
Sbjct: 6 PVPYRVGPMDYQPPVFCDCKAKAARWISWSVDNPGRRYFKCRDARAGGSDFF 57
>Os07g0103000 Hypothetical protein
Length = 74
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQ 64
PIP+R+GP +YQ V+C CR KAA WISWS DNP RRY+KCRNA+
Sbjct: 20 PIPHRMGPMEYQPTVLCRCRAKAARWISWSRDNPGRRYYKCRNAR 64
>Os12g0198650
Length = 67
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 20 PIPYRVGPFDYQSAVMCDCRVKAAWWISWSPDNPSRRYFKCRNAQ 64
PIP VGPF+Y VMC KAA WISW DNPSRRY KC N +
Sbjct: 20 PIPPHVGPFEYHPVVMCKGGAKAARWISWGVDNPSRRYHKCHNQK 64
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.498
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,028,103
Number of extensions: 157203
Number of successful extensions: 457
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 16
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)