Os11g0256300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, GRF-type domain containing protein.
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Os11g0256300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, GRF-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.36 | 0.316 | 13.6 | -0.137 | 1.11 | 0.778 | -0.336 | 0.688 | 0.285 | 21.2 | 20.7 | 1302 | -- | -- |
| 45.87 | 0.315 | 13.6 | -0.192 | 1.06 | 0.633 | -0.356 | -- | 0.263 | 21.2 | 21.38 | 1088 | -- | -- |
| 45.61 | 0.315 | 13.6 | -0.145 | 1.1 | 0.783 | -- | 0.653 | 0.276 | 21.2 | 20.9 | 1285 | -- | -- |
| 45.85 | 0.315 | 13.6 | -0.218 | 1.04 | 0.639 | -- | -- | 0.253 | 21.2 | 21.28 | 966 | -- | -- |
| 103.29 | 0.473 | 13.6 | -0.225 | -- | 0.903 | -- | 0.323 | 0.209 | -- | 21.4 | 793 | -- | -- |
| 58.15 | 0.358 | 13.6 | 0.0181 | 1.13 | -- | -0.263 | -- | 0.424 | 21.4 | -- | -- | -- | -- |
| 58.4 | 0.358 | 13.6 | 0.0276 | 1.13 | -- | -- | -- | 0.424 | 21.4 | -- | -- | -- | -- |
| 99.85 | 0.465 | 13.6 | -0.232 | -- | 0.838 | -- | -- | 0.1 | -- | 24.87 | 720 | -- | -- |
| 46.93 | 0.319 | 13.6 | -- | 1.03 | 0.569 | -- | -- | 0.289 | 21.2 | 21.3 | 913 | -- | -- |
| 133.17 | 0.539 | 13.6 | 0.0336 | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
| 58.42 | 0.358 | 13.6 | -- | 1.13 | -- | -- | -- | 0.421 | 21.4 | -- | -- | -- | -- |
| 101.21 | 0.469 | 13.6 | -- | -- | 0.812 | -- | -- | 0.126 | -- | 24.9 | 720 | -- | -- |
| 133.2 | 0.539 | 13.6 | -- | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.38 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 2 | 45.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 4 | 45.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 5 | 45.54 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 17 | 45.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 19 | 45.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 24 | 45.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 32 | 45.82 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 38 | 45.87 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 42 | 45.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 44 | 45.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 49 | 45.91 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 109 | 46.10 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 111 | 46.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 128 | 46.17 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 179 | 46.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 249 | 46.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 329 | 46.53 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 18 |
| 353 | 46.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 373 | 46.59 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 419 | 46.65 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 451 | 46.70 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 531 | 46.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 575 | 46.86 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 622 | 46.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 623 | 46.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 647 | 46.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 659 | 46.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 698 | 47.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 787 | 47.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 788 | 47.16 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 814 | 47.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 856 | 47.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 904 | 47.30 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 22 |
| 918 | 47.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 954 | 47.37 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 966 | 47.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 981 | 47.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 1000 | 47.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 7 |