BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0248200 Os11g0248200|AK107293
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0248200 RNA-binding protein Lupus La domain containing... 503 e-143
Os08g0542900 Lupus La protein family protein 243 2e-64
Os07g0102500 Lupus La protein family protein 209 2e-54
Os03g0566500 Lupus La protein family protein 204 7e-53
Os12g0225100 Nucleotide-binding, alpha-beta plait domain co... 167 1e-41
>Os11g0248200 RNA-binding protein Lupus La domain containing protein
Length = 354
Score = 503 bits (1295), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/340 (75%), Positives = 256/340 (75%)
Query: 1 YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSN 60
YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSN
Sbjct: 1 YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSN 60
Query: 61 DGTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPN 120
DGTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPN
Sbjct: 61 DGTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPN 120
Query: 121 GTGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLLNTCMTX 180
GTGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLLNTCMT
Sbjct: 121 GTGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLLNTCMTK 180
Query: 181 XXXXXXXXHDINDGHGVEDDVSTSNQSNEKHGEEALQTPDAQGEQLPDESAGDMXXXXXX 240
HDINDGHGVEDDVSTSNQSNEKHGEEALQTPDAQGEQLPDESAGDM
Sbjct: 181 GGKGKKGGHDINDGHGVEDDVSTSNQSNEKHGEEALQTPDAQGEQLPDESAGDMGRGRGK 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNAAHPVGTPPSNHXXXXXXXXXX 300
RNAAHPVGTPPSNH
Sbjct: 241 GRGRGGRGRGRGYHYHNNNQQSYHNHQQHNHQNSNNRNAAHPVGTPPSNHPAKNEQQQQA 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXRMPDGTRGFAMGRGKPQ 340
RMPDGTRGFAMGRGKPQ
Sbjct: 301 QPQPQPQPQPQPPAGANKQPPGPRMPDGTRGFAMGRGKPQ 340
>Os08g0542900 Lupus La protein family protein
Length = 427
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 111/179 (62%), Positives = 147/179 (82%), Gaps = 1/179 (0%)
Query: 1 YFSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSN 60
YFSD+NLATTEHLM+F+ +DPEG+VP+SVVA F+KI+ L+ + LA+ LRTS++LVVS+
Sbjct: 118 YFSDVNLATTEHLMKFMIRDPEGFVPMSVVASFRKIRELVSERSALAAVLRTSAELVVSD 177
Query: 61 DGTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTP- 119
DG RV+R FTE+D EE+Q+RIVVAENL ++H Y NLMK+FS GSVK+IRTCYPQ
Sbjct: 178 DGKRVRRRVLFTEADAEEVQSRIVVAENLREEHRYPNLMKIFSAFGSVKSIRTCYPQGGI 237
Query: 120 NGTGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLLNTCM 178
+G G T +++K++MLFANK+HAFVEY+TVEDAEKA+ E + R+WR+G+RVR L C+
Sbjct: 238 DGAGTSTGKASKIEMLFANKVHAFVEYETVEDAEKAVSEFSSGRSWRDGIRVRSLLGCL 296
>Os07g0102500 Lupus La protein family protein
Length = 438
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 130/173 (75%), Gaps = 5/173 (2%)
Query: 2 FSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSND 61
FSDINL E L++ + KD EGYVP+SV+A +KKIK+L +N ML ALRTS+KL+VS+D
Sbjct: 127 FSDINLVANEFLLKIMNKDSEGYVPLSVIASWKKIKSLGATNQMLVKALRTSTKLIVSDD 186
Query: 62 GTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPNG 121
G +V+R QPFTE EELQ+R+++AENLP+D +L K+F VGSVK I+ C+PQ P+
Sbjct: 187 GKKVRRRQPFTEKHKEELQSRMIIAENLPEDSSRNSLEKIFGVVGSVKNIKMCHPQEPS- 245
Query: 122 TGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVRLL 174
T R++K D L +NK+HA VEY++ + AEKA+ +LNDERNWR GLRVR +
Sbjct: 246 ----TARASKSDTLVSNKMHALVEYESSQQAEKAVEKLNDERNWRKGLRVRTV 294
>Os03g0566500 Lupus La protein family protein
Length = 429
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 96/171 (56%), Positives = 129/171 (75%), Gaps = 5/171 (2%)
Query: 2 FSDINLATTEHLMRFITKDPEGYVPISVVAGFKKIKALIQSNAMLASALRTSSKLVVSND 61
FSD NL + LM+ + KDPE YVP+SV++ +KKIKA+ +N +L +ALRTSSKLVVS+D
Sbjct: 125 FSDTNLVANDFLMKIMNKDPECYVPMSVISSWKKIKAMGVTNQLLVNALRTSSKLVVSDD 184
Query: 62 GTRVKREQPFTESDLEELQARIVVAENLPDDHCYQNLMKLFSTVGSVKTIRTCYPQTPNG 121
G +V+R QPFTE EELQ+R+V+AENLP+D +L K+F +GSVK IR C+PQ P+
Sbjct: 185 GKKVRRAQPFTERHKEELQSRMVIAENLPEDSTRNSLEKIFGIIGSVKNIRICHPQEPS- 243
Query: 122 TGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWRNGLRVR 172
+ RS+K D L +NKLHA +EY+T + A++A+ +LNDERNWR GLRVR
Sbjct: 244 ----SARSSKSDALISNKLHALIEYETSQQADRAVDKLNDERNWRKGLRVR 290
>Os12g0225100 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 243
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Query: 107 SVKTIRTCYPQTPNGTGPVTNRSAKLDMLFANKLHAFVEYDTVEDAEKAIVELNDERNWR 166
SVKTIRTCYPQ+ NG P TNRSAKLDMLFANKLHAFVEY+T+EDAEKAI+ELNDE+NWR
Sbjct: 1 SVKTIRTCYPQSSNGNSPATNRSAKLDMLFANKLHAFVEYETLEDAEKAILELNDEKNWR 60
Query: 167 NGLRVRLLNTCMTXXXXXXXXXHDINDGHGVEDDVSTSNQSNEKHGEEALQTPDAQGEQL 226
NGLRVRLLNTCMT DG+G E+DVSTSNQSNEK EE Q D + L
Sbjct: 61 NGLRVRLLNTCMTKGAGKGKKGVHEADGNG-EEDVSTSNQSNEKQLEEPSQLSDMLPDHL 119
Query: 227 PDESAGD 233
D+S+ D
Sbjct: 120 FDDSSND 126
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,751,607
Number of extensions: 274734
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)