Os07g0102500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lupus La protein family protein.
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Os07g0102500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lupus La protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.22 | 0.591 | 4.11 | 2.11 | 0.145 | 122 | 0.283 | 256 | -0.113 | 3.54 | 15.06 | 630 | -- | -- |
| 162.1 | 0.598 | 3.1 | -0.0504 | 0.149 | 1.1 | 0.232 | -- | -0.12 | 3.66 | 15.06 | 630 | -- | -- |
| 158.44 | 0.586 | 4.11 | 2.08 | 0.151 | 123 | -- | 257 | -0.12 | 3.85 | 15.04 | 630 | -- | -- |
| 161.18 | 0.591 | 3.11 | -0.0471 | 0.154 | 1.28 | -- | -- | -0.124 | 3.8 | 14.8 | 629 | -- | -- |
| 159.63 | 0.588 | 4.1 | 2.06 | -- | 123 | -- | 258 | -0.114 | -- | 15.04 | 629 | -- | -- |
| 164.44 | 0.601 | 3.1 | -0.0943 | 0.162 | -- | 0.123 | -- | -0.132 | 3.56 | -- | -- | -- | -- |
| 164.48 | 0.601 | 3.1 | -0.0964 | 0.163 | -- | -- | -- | -0.132 | 3.6 | -- | -- | -- | -- |
| 162.45 | 0.594 | 3.11 | -0.0418 | -- | 1.31 | -- | -- | -0.121 | -- | 14.8 | 629 | -- | -- |
| 161.19 | 0.591 | 3.1 | -- | 0.152 | 1.31 | -- | -- | -0.113 | 3.95 | 14.8 | 629 | -- | -- |
| 165.95 | 0.602 | 3.1 | -0.0895 | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
| 164.73 | 0.6 | 3.1 | -- | 0.161 | -- | -- | -- | -0.122 | 3.6 | -- | -- | -- | -- |
| 162.44 | 0.594 | 3.1 | -- | -- | 1.34 | -- | -- | -0.109 | -- | 14.8 | 629 | -- | -- |
| 166.17 | 0.602 | 3.1 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.26 | wind | 7.0 | 90 | > th | dose dependent | rect. | 23 | 2 |
| 3 | 143.80 | wind | 7.0 | 90 | > th | dose independent | rect. | 23 | 2 |
| 7 | 148.83 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 6 |
| 12 | 149.75 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 6 |
| 18 | 150.81 | wind | 7.0 | 90 | > th | dose dependent | rect. | 22 | 10 |
| 26 | 151.51 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 2 |
| 44 | 152.37 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 2 |
| 109 | 152.96 | wind | 9.0 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 118 | 152.96 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 126 | 152.97 | wind | 9.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 132 | 152.97 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 206 | 153.08 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 208 | 153.08 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 344 | 154.68 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 484 | 156.36 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 1 |
| 489 | 156.36 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 494 | 156.40 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 501 | 156.48 | temperature | 15.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 513 | 156.48 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 627 | 157.02 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 6 |
| 668 | 157.27 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 677 | 157.27 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 721 | 157.39 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 742 | 157.45 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 19 | 1 |
| 862 | 157.76 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 19 | 7 |
| 869 | 157.77 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 871 | 157.77 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 917 | 157.87 | radiation | 30.0 | 10 | < th | dose independent | rect. | 22 | 13 |
| 927 | 157.93 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 972 | 158.02 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 2 |
| 988 | 158.05 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 22 | 1 |