Os12g0225100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os12g0225100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.7 | 0.238 | 13.9 | 0.625 | 0.334 | 0.87 | 0.511 | 0.522 | 0.23 | 21.9 | 20.9 | 1803 | -- | -- |
| 26.28 | 0.239 | 14 | 0.514 | 0.336 | 0.789 | 0.462 | -- | 0.186 | 21.7 | 21.4 | 1918 | -- | -- |
| 26.51 | 0.24 | 13.9 | 0.613 | 0.327 | 0.86 | -- | 0.541 | 0.228 | 21.3 | 21.1 | 1897 | -- | -- |
| 27.2 | 0.243 | 14 | 0.51 | 0.33 | 0.762 | -- | -- | 0.197 | 21.2 | 21.39 | 1922 | -- | -- |
| 31.99 | 0.263 | 13.9 | 0.661 | -- | 0.818 | -- | 0.589 | 0.212 | -- | 21.7 | 2179 | -- | -- |
| 42.83 | 0.307 | 13.9 | 0.88 | 0.355 | -- | 0.541 | -- | 0.416 | 21.8 | -- | -- | -- | -- |
| 43.83 | 0.31 | 13.9 | 0.861 | 0.36 | -- | -- | -- | 0.416 | 21.3 | -- | -- | -- | -- |
| 32.5 | 0.266 | 14 | 0.552 | -- | 0.709 | -- | -- | 0.167 | -- | 24.21 | 2153 | -- | -- |
| 29.93 | 0.255 | 14 | -- | 0.347 | 1.04 | -- | -- | 0.0827 | 21.3 | 20.01 | 7730 | -- | -- |
| 51.36 | 0.335 | 13.9 | 0.863 | -- | -- | -- | -- | 0.415 | -- | -- | -- | -- | -- |
| 63.38 | 0.372 | 13.9 | -- | 0.36 | -- | -- | -- | 0.32 | 21.4 | -- | -- | -- | -- |
| 36.42 | 0.281 | 14 | -- | -- | 1.04 | -- | -- | 0.0593 | -- | 21.1 | 3641 | -- | -- |
| 70.99 | 0.393 | 13.9 | -- | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 24 | 25.72 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 42 | 25.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 11 |
| 164 | 26.03 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 175 | 26.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 186 | 26.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 187 | 26.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 196 | 26.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 212 | 26.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 214 | 26.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 221 | 26.09 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 247 | 26.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 277 | 26.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 376 | 26.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 395 | 26.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 584 | 26.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 587 | 26.49 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 600 | 26.50 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 652 | 26.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 662 | 26.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 670 | 26.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 737 | 26.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 739 | 26.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 20 |
| 761 | 26.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 812 | 26.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 911 | 26.84 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 999 | 26.91 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |